Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_2248 |
Symbol | |
ID | 4665584 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 2471530 |
End bp | 2473263 |
Gene Length | 1734 bp |
Protein Length | 577 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639823453 |
Product | dihydroxy-acid dehydratase |
Protein accession | YP_970600 |
Protein GI | 120610922 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism |
COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0766629 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000565085 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACCACCC CTCCGCGCAA ACTCCGCTCC ACCGAATGGT TCGGCACGGC CGACAAGAAC GGCTTCATGT ACCGCAGCTG GATGAAGAAC CAGGGCATCC CCGACCATGA GTTCGACGGC CGCCCGATCA TCGGCATCTG CAACACCTGG TCCGAACTCA CGCCCTGCAA CGCGCACTTC CGCAAGATCG CCGAGCACGT CAAGCGCGGC ATCTACGAAG CGGGCGGCTT CCCGGTCGAA TTCCCCGTGT TCTCCAACGG CGAATCCAAC CTGCGCCCCA CCGCCATGCT CACGCGCAAC CTGGCCAGCA TGGATGTGGA AGAAGCCATC CGCGGCAACC CGATCGACGC CGTCGTGCTG CTCACGGGCT GCGACAAGAC CACGCCCGCG CTGCTGATGG GCGCGGCCAG CTGCGACGTG CCGGCCATCG TGGTCACGGG CGGGCCCATG CTCAACGGCA AGCTGGCCGG CAAGGACATC GGCTCGGGCA CGGCCGTGTG GCAGCTGCAC GAATCCCTGA AGGCGGGCGA GATCGAGCTG CACCAGTTCC TCGCGGCCGA AGGCGGCATG TCGCGCTCGG CCGGCACCTG CAACACCATG GGCACGGCCA GCACCATGGC CTGCATGGCC GAATCGCTGG GCACCTCGCT GCCGCACAAC GCCGCGATTC CCGCGGTGGA CGCGCGCCGC TACGTGCTGG CGCACATGTC CGGCAAGCGC ATCGTCGAGA TGGCGCACGA AGGGCTCACG CTCTCGAAGA TCCTGACGCG CGAAGCCTTC GAGAACGCCA TCCGCACCAA CGCCGCCATC GGCGGCTCGA CCAATGCCGT CATCCACCTG AAGGCGATCG CCGGCCGCAT CGGCGTGCAG CTCGACCTGG AGGACTGGAC CCGCATCGGG CGTGGCACGC CCACGCTGGT GGACCTGCAG CCCTCGGGCC GCTTCCTGAT GGAGGAGTTC TACTACGCGG GCGGCCTGCC CGCCGTGCTG CGCCGCCTGG GCGAGAACGG CCTGCTGCCC CACCCCGACG CGCTCACCGT GAACGGCAGG AGCCTGTGGG ACAACGTGCG CGACGCGCCC CAGTACAACG ACGAGGTGAT CCGCCCGCTG GACAACCCGC TGATCGCGGA TGGCGGCATC TGCATCCTGC GCGGCAACCT GGCGCCGCGC GGCGCGGTGC TCAAGCCTTC GGCCGCCACG CCCGAGCTGC TCCGGCACCG GGGCCGCGCC GTGGTGTTCG AGAACCTGGA GCATTACAAG GAGCGCATCG TCGATGAGGA CCTGGACATC GACGCCAGCT GCGTGATGGT CATGAAGAAC TGCGGCCCCA AGGGCTACCC CGGCATGGCC GAGGTGGGCA ACATGGGCCT GCCGCCCAAG CTGCTGCGGC AGGGCGTGAA GGACATGGTC CGCATCTCCG ACGCGCGCAT GAGCGGCACC GCCTACGGCA CCGTGGTGCT GCACGTGGCG CCCGAGGCCG CGGCCGGCGG GCCGCTGGCC GCCGTGCGCG ACGGCGACTT CATCGAGCTG GACTGCGAAC AGGGGCGCCT GCACCTGGAC ATCAGCGACG AGGAACTGGC CGCGCGCCTG GCCGAACTGG CCGCCACCGA CCATGGCGGC CGCGGCGGGT ACCAGCGCCT GTACGTCGAT CACGTGCTGC AGGCCGACGA AGGCTGCGAC TTCGATTTCC TGGTGGGGTG CCGTGGCGCG GCGGTTCCGC GCCACTCGCA TTGA
|
Protein sequence | MTTPPRKLRS TEWFGTADKN GFMYRSWMKN QGIPDHEFDG RPIIGICNTW SELTPCNAHF RKIAEHVKRG IYEAGGFPVE FPVFSNGESN LRPTAMLTRN LASMDVEEAI RGNPIDAVVL LTGCDKTTPA LLMGAASCDV PAIVVTGGPM LNGKLAGKDI GSGTAVWQLH ESLKAGEIEL HQFLAAEGGM SRSAGTCNTM GTASTMACMA ESLGTSLPHN AAIPAVDARR YVLAHMSGKR IVEMAHEGLT LSKILTREAF ENAIRTNAAI GGSTNAVIHL KAIAGRIGVQ LDLEDWTRIG RGTPTLVDLQ PSGRFLMEEF YYAGGLPAVL RRLGENGLLP HPDALTVNGR SLWDNVRDAP QYNDEVIRPL DNPLIADGGI CILRGNLAPR GAVLKPSAAT PELLRHRGRA VVFENLEHYK ERIVDEDLDI DASCVMVMKN CGPKGYPGMA EVGNMGLPPK LLRQGVKDMV RISDARMSGT AYGTVVLHVA PEAAAGGPLA AVRDGDFIEL DCEQGRLHLD ISDEELAARL AELAATDHGG RGGYQRLYVD HVLQADEGCD FDFLVGCRGA AVPRHSH
|
| |