| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2054 |
|---|
| Symbol | |
|---|
| ID | 4666083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 2249307 |
|---|
| End bp | 2251418 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639823263 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_970410 |
|---|
| Protein GI | 120610732 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.314681 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.98162 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGAACA TCGGTCTGGC GCTGCTGCTG GGCAGCACGG GCGCCCCGGC GCAGGAAGGG
CCTGCCCCCG CGCCCACCCT GGGCACGGTG GAAGTCCGGG CCGAGCGCGC GGCGCCCGGC
AGCTCGCTGG GGCTGGACAT CCCGCAGGAC GTGGGCTCCC GCCTGGGCCT CACGCCCCGC
GAGACTCCCG CCAGCGTCAG CGCCATGGAC GCGGAGGACA TCGCCGGCCG CGACCTCACC
CGCGCCCAGG ATGTCGCCAC GCGCATGCCG GGCATCACCG AATCGCCGGC GCCGGGCAAT
GGCGGCACAT CGCTGTCCGC ACGGGGCTTC GTGGGGCACA ACTCCGTCGC CCAGCTGATC
GACGGAACGC GTCTGGCCGT CGCCGCGGGC ACCGTGACCT ACCCGTTCTC CACCTGGCCG
CTGGCCTCGG TCGAAGTCCT GCGCGGGCCC GCGTCGGTGC TGTACGGCGA CGGGGCCATC
GGCGCGGCGG TGAACTACGT CACGCGCAAG CCCGCCTGGA ACCGGACGCA CCGCGAGGCA
TTCCTGACAG CGGGCTCGCA TGGGCAACGG CAGGGCGGCG TCGGCTTGCG CGGCCCCGTC
AACGACGCCG CCGCCTACTC GGTCTATCTC GACGCCGCCG GCGGCGACGG CTACCGGGCA
CTGGAGGAAG TGGAGCGCCG CAACTACGCG CTGGCACTGT CCGTCAGGCC CGCGTCCGGA
CTGGCGGCCA CCTTCTCGCT GGACGGCGGA ATGAACGACG ATGCGCGCTA CTTCGGTACA
CCGCTGCGCG GCGGAAGCTT CGACGACCGG GTACGACGCA TCAACTACAA CGTTTCGGAC
GCGGTCGTGC GCTACGACGA CCGGCTCTGG CGCGCGAAGG TGGAATACCG TGCCGGCCCG
GACGTGCGGC TGCGCAACGA GACCTACCAC GCGACCTCGG AGCGCCACTG GCGCAACGCC
GAATCCTATG GCTTCGACCG CACCGGCGGC TCCGTCATCC GCTCGGACTA CCTGGAGATC
CTGCACGACC TGCAGCAGAC CGGCAACCGG CTGGACGTGA GCATCGACGG CTCGGTCGCC
GGCCTTCCGA ACCGCTTCGT CGCCGGCGTG GACTGGCACC GCACCAGGCT CCTGCACACC
AACAATGCAC CCTACCGCGG GGCCAGTGCG GTCGATCCCT ACGCCTTCGA CCCCGGCGTC
TTCGACAGCC CCGACCCCAC CAAGCCCGGG CGGCAGGCCC GGCTGCGGAC GACCGCGCTC
TACGCCGAGA ACGCCCTGGA CCTGGCCCCG CGATGGAAGC TGGTGGGCGG ACTGCGCCAC
GAGCGCACCA GGCTCGATGA CGACAACCTG CGAACGGCCG TGCGCCAGCG CAAATCCTAC
GCCCCCACGA CGGGCCGGAT CGGCCTGGTG TGGACGGCCA GCGAGACCCT GTCTTTCTAC
GGCCAGTACG CCACCGGCAC CGATCCGCTG AGCGGCGCGC TGTCCCTGCC CGGCGGCGGC
ACGGTCTTCG ACCTGACCCG CGGGCGGCAG GCCGAGGTGG GCGCCAAAGG CCTGCTGCCC
GCCATCCGCG GCGAGTGGAC CGCCGCGGCT TACCGGATCG ACAAACGCCA CCTGCTCTCG
CGCGATCCCG ACGAGCCGGG CGTCGTCCGG CAGGTCGGGC ACCAGTCCTC CACCGGGCTC
GAACTGGCGT TCGCCGCGGA ACCGGTGTCC GGCTGGACCG TGGACGCCAA TGCCGCATGG
CTGCGGGCCC GCTATGAGGA CTTCGACGAG GCGAGCGGCG GCACGGCGGT ATCGCGACGC
GGGAACGTGC CGGTCGGCGT GCCGGAGCGC ACGGCCCATC TCTGGACCAC CTACCGCCTC
GCCCCCCGAT GGCGTGCCGG CGCGGGACTG CGCTATGTCG GTGCGCGGTT CACCAACGCG
GCGAACTCGG GCCGGTTGCC CGGCTACACC GTGGCCGATG CTTCGCTGGC GTACGAGCAT
TCCTCCGCGC TGCGGCTCAT GCTGTCGGTA CGGAACCTGG CCGATCGCAC GTATCCGGTG
TCCGGCTCCG GTTCGACCTG GCTGCTGGGA GCGCCGAGGA CCGTGCAACT GACCCTCCGC
GCGACGTTCT GA
|
|---|
| Protein sequence | MRNIGLALLL GSTGAPAQEG PAPAPTLGTV EVRAERAAPG SSLGLDIPQD VGSRLGLTPR
ETPASVSAMD AEDIAGRDLT RAQDVATRMP GITESPAPGN GGTSLSARGF VGHNSVAQLI
DGTRLAVAAG TVTYPFSTWP LASVEVLRGP ASVLYGDGAI GAAVNYVTRK PAWNRTHREA
FLTAGSHGQR QGGVGLRGPV NDAAAYSVYL DAAGGDGYRA LEEVERRNYA LALSVRPASG
LAATFSLDGG MNDDARYFGT PLRGGSFDDR VRRINYNVSD AVVRYDDRLW RAKVEYRAGP
DVRLRNETYH ATSERHWRNA ESYGFDRTGG SVIRSDYLEI LHDLQQTGNR LDVSIDGSVA
GLPNRFVAGV DWHRTRLLHT NNAPYRGASA VDPYAFDPGV FDSPDPTKPG RQARLRTTAL
YAENALDLAP RWKLVGGLRH ERTRLDDDNL RTAVRQRKSY APTTGRIGLV WTASETLSFY
GQYATGTDPL SGALSLPGGG TVFDLTRGRQ AEVGAKGLLP AIRGEWTAAA YRIDKRHLLS
RDPDEPGVVR QVGHQSSTGL ELAFAAEPVS GWTVDANAAW LRARYEDFDE ASGGTAVSRR
GNVPVGVPER TAHLWTTYRL APRWRAGAGL RYVGARFTNA ANSGRLPGYT VADASLAYEH
SSALRLMLSV RNLADRTYPV SGSGSTWLLG APRTVQLTLR ATF
|
|---|
| |