| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2052 |
|---|
| Symbol | |
|---|
| ID | 4665752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 2244945 |
|---|
| End bp | 2247617 |
|---|
| Gene Length | 2673 bp |
|---|
| Protein Length | 890 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639823262 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_970409 |
|---|
| Protein GI | 120610731 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.292542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAAG GTATCAATTT GCAGAACGAC AAAGAGCCAT CGCCGATGGC CGAGGGGAAC
CCCGCCGATT TCTCCGCCCA TACGCCCATG ATGCAGCAGT ATCTTGCCCT CAAGGCAGGC
TACCCCGACA CGCTGGTCTT CTACCGCATG GGCGATTTCT ACGAGCTGTT CTGGGCCGAC
GCGGAGAAGG CCGCGCGCCT GCTGGACATC ACGCTCACGC AGCGCGGCCA GTCCGCGGGG
CAGCCGGTGG TGATGGCGGG CGTGCCCTTT CACGCGCTGG AGAACTACCT GGGCCGGCTG
ATCCGCATGG GCGAGTCGGT GGCGATCTGC GAGCAGGTGG GCGAGGTGGG CGCGGCCAAG
GGGCCGGTGG AGCGCAAGGT GGTGCGCGTG GTCACGCCCG GCACGCTCAC CGACAGCGAA
CTGCTGCCCG ACAAGGCCGA ATCCATGCTG CTGGCCGTGC ACCAGGCGCC CCGTGCGCGC
TGCGGGCTGG CGTGGCTCAG CGTCACCCAG GGCGTGGTGC ACCTGGCCGA ATGCACGCAC
GACGAAGTCG GCACCTGGAT CGCGCGCATC GGCCCGAGCG AGGTGATCTA CAGCGCCGGC
GTGACCGAGC GCTTCGAGCA GCAGTTGCAG GCACTGCGCC AGGGCGGCGT GCTGTCCTGC
CCCCTGAGCC TGCGGCCCGA CTGGCAGTTC GACGGCGCCC TGGGCGCGCG CAAGCTGCTG
GAACAGCTCG GTGCCGCCAG CCTCAACGCC TGGGACGCGC AGGACCTCGC CCATGCCCAT
GCCGCCAGTG CCGCCCTGCT CTCCTATGCC GAGCACACGC AGGGCCGCGC GCTCACGCAC
ATCCACGCGG TGCGCGTGCA GAAGAACGAC GAACTGATCG CCCTGCCCCC TGCCACGCGC
CGCAACCTGG AACTCACGCG CACCCTGCGC GGCGAGGATG CGCCCACCCT TTTCTCGCTG
CTGGACACCT GCATGACCGG CATGGGCAGC CGCCTGCTCA AGACCTGGCT GCTGGAGCCG
CGCCGCGACC GCACCGAGGC GCGTGCACGG CTGGCGGCCA CGGCGGAACT GCGCGGCGAC
CACGGCGGCA CGGGCAGCTG GCAGGCCCTG CGCGCCGCGC TGCGCGGCGT GAGCGACGTG
GAGCGCATCA CCGCGCGCAT CGCGCTGCGG CAGGTGCGCC CGCGCGAACT CGTCGCGCTC
TGCAAGACCC TGCACAAGGC CGAACAGATC GCCGCGGAGC ACCGCTGGCA GGACCCCCTG
CTGGCCGGCA TCTCCGGGGA CCTGCACGCA CCGCCGGCCT GCGGCGCGCT GCTGGCCGGC
GCGATCCTGG AGGAGCCCTC GGCCCTGGTG CGCGACGGCG GCGTGATCGC CGACGGCTTC
GACGCCGAAC TCGACGAACT GCGCGGCATC CAGAACCATT GCGACGACTT CCTGCTCGCG
CTGGAAACGC GCGAGAAGGC CCGCACCCTG ATCCCCAACC TGCGCGTGCA GTTCAACAAG
GTGCACGGCT TCTACATCGA GGTCACGAGC AGCTACCTCG ACCGCATTCC CGACGACTAC
CGCCGCCGCC AGACGCTGAA GAACGCCGAG CGCTTCATCA CGCCCGAACT CAAAGCCTTC
GAGGACAAGG CCCTGTCGGC CCAGGAGCGC GCGCTGGCGC GCGAGAAGTG GCTGTACGAG
CAGGTGCTGG ACCAGTTGCA GCAGCACGTG CCGGCGCTCA CGCGCGCCGC CCAGGCCATC
GCCGCGCTGG ACGCGCTGTG CGCCCTGGCC GAGCGCTCGC TCACGCTGGG CTGGTGCGCG
CCGCAGTTCG CGGCCGAGCC CTGCATCGAG ATCGAGGGCG GCCGCCACCC GGTGGTGGAG
GCACGCCTGG CGGAGACCTC GGCCGGCGCG TTCATCCCGA ACCACACGCG CCTGAACGCC
AACACGCGCA TGCAGATCAT CACCGGCCCC AACATGGGCG GTAAATCGAC CTACATGCGG
CAGGTGGCGC TCATCGTGCT GCTGGCGAGC ATGGGCAGCC ACGTGCCCGC CGCGCACTGC
CGGCTGGGCC CGATCGATGC GATCCATACC CGCATCGGCG CGGCGGACGA CCTCGCCAAC
GCCCAGTCCA CCTTCATGAT GGAGATGACC GAGGCCGCGC AGATCCTTCA CGCCGCCACG
CCGCATTCGC TGGTGCTGAT GGACGAGATC GGCCGCGGCA CGAGCACCTT CGACGGGCTG
GCGCTGGCCA GCGGCATCGC GACCCACCTG CACGACCGCA CGCGCGCCTT CACGCTGTTC
GCCACGCACT ATTTCGAACT GACGGAGCTG GCCGCGCGCC ATGCGCACGC AGTGAACGTG
CACGTGGGCG CCACCGAATC CGGCTCGGAC ATCGTGTTCC TGCACGAGAT CCAGCCCGGC
CCGGCCAGCC GGAGCTACGG CATCCACGTC GCGCGGCTCG CGGGCGTGCC CGCGCCGGTG
CTGAACCATG CCCGGCATGC GCTCTCGGCA CTGGAAGAGC GCGCCAACGA AGGCGAGACG
CAGGTGGACC TGTTCGCCCC GCCGCCGGAA TCCGAGGCGC CGGGCATCAG CCCGGTGGAA
GCGGCGCTGC AGGGCATCCA CCCCGACAGC CTGAGCCCGC GCGAGGCGCT GGACGCGCTC
TACCAGCTCA AGCGGCTGGC GCAGCCGGGC TGA
|
|---|
| Protein sequence | MDKGINLQND KEPSPMAEGN PADFSAHTPM MQQYLALKAG YPDTLVFYRM GDFYELFWAD
AEKAARLLDI TLTQRGQSAG QPVVMAGVPF HALENYLGRL IRMGESVAIC EQVGEVGAAK
GPVERKVVRV VTPGTLTDSE LLPDKAESML LAVHQAPRAR CGLAWLSVTQ GVVHLAECTH
DEVGTWIARI GPSEVIYSAG VTERFEQQLQ ALRQGGVLSC PLSLRPDWQF DGALGARKLL
EQLGAASLNA WDAQDLAHAH AASAALLSYA EHTQGRALTH IHAVRVQKND ELIALPPATR
RNLELTRTLR GEDAPTLFSL LDTCMTGMGS RLLKTWLLEP RRDRTEARAR LAATAELRGD
HGGTGSWQAL RAALRGVSDV ERITARIALR QVRPRELVAL CKTLHKAEQI AAEHRWQDPL
LAGISGDLHA PPACGALLAG AILEEPSALV RDGGVIADGF DAELDELRGI QNHCDDFLLA
LETREKARTL IPNLRVQFNK VHGFYIEVTS SYLDRIPDDY RRRQTLKNAE RFITPELKAF
EDKALSAQER ALAREKWLYE QVLDQLQQHV PALTRAAQAI AALDALCALA ERSLTLGWCA
PQFAAEPCIE IEGGRHPVVE ARLAETSAGA FIPNHTRLNA NTRMQIITGP NMGGKSTYMR
QVALIVLLAS MGSHVPAAHC RLGPIDAIHT RIGAADDLAN AQSTFMMEMT EAAQILHAAT
PHSLVLMDEI GRGTSTFDGL ALASGIATHL HDRTRAFTLF ATHYFELTEL AARHAHAVNV
HVGATESGSD IVFLHEIQPG PASRSYGIHV ARLAGVPAPV LNHARHALSA LEERANEGET
QVDLFAPPPE SEAPGISPVE AALQGIHPDS LSPREALDAL YQLKRLAQPG
|
|---|
| |