| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2018 |
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| Symbol | |
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| ID | 4669866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 2194910 |
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| End bp | 2196496 |
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| Gene Length | 1587 bp |
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| Protein Length | 528 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639823229 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_970376 |
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| Protein GI | 120610698 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00336754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00884762 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACATGG AAAACTTCGC CCCGATCATG TTCGCGGGGC TGATCGTGAT CATGCTGATC
GGCTTTCCGG TCGCGTTCTC GCTCGCGGCC CTGGGCCTGT TCAGCGGCTT CTTCGCCATC
GAGATGGGCT GGTTCCCGGC CAACTTCATG GCCAACCTGC CGATCAACAT GTTCGGCATC
CTGTCGAACG ACCTGCTCCT GGCCATCCCG TTCTTCACGC TGATGGGCGC GGTGCTCGAG
AAATGCGGCC TCGCCGAGGA CATGCTCGAC TCCATGGGCC AGCTCTTCGG CCCCGTGCGC
GGCGGCCTGG GCTACTCGGT CATCATCGTG GGCTTCATCC TGGGCGCCAT CACCGGCACC
GTGGCCGGCC AGGTGATCGC CATGGCGATG ATCTCGCTGC CCGTGATGAT GCGCTACAAC
TACAACATGC GCTACGCCAC CGGCGTGCTG GCCGCCTCGG GCACCATCAC CCAGCTCGTG
CCGCCCTCGC TGGTGCTGAT CGTCATGGCC GACCAGCTCG GCCGCTCGGT GGGCGACATG
TACAAGGGCG CGTGGGGTCC CGCCATCCTG CAGGTGCTGA TCTTCGCGAT CTACACCTTC
CTGCTGGGCC GCATCCGCCC CGAATACGTG CCCGGCCTGC CCAAATCGGC GCGCACGCTG
CACGGCTGGG CCCTCTGGGG CAAATGCCTG CGTGGCATCA TCCCCTCGGC CATCCTGATC
TTCGCGGTGC TCGGCTCCAT GGGCGGCCTG CCGTTCATGG ACCACGCCAT CGCCACGCCC
ACCGAGGCGG GCGCCATGGG CGCCGTGGGC TCGCTGATCC TCGCGGCCAT CCACAAGCGG
CTGACGTGGA AGCTCATCAA GGAAGCCATG GACGGCACCA TGCGCCTCAC CGCCATGGTG
GTGTTCATCC TGATCGGCTC GCGCGTGTTC TCGCTGGTCT TCCAGGGCGT CGACGGGGCG
ATCTGGATCG AGCACATGCT CAGCGACCTG CCGGGCGGCC AGATCGGCTT CCTGATCGTG
GTGAACCTCT TCATCTTCTT CCTGGCGTTC TTCCTCGACT TTTTCGAGAT CGCCTTCATC
ATCCTGCCGC TGCTGGGCCC CGTGGCCCAC AAGCTGGGCA TCGACCTCGT GTGGTTCGGC
GTGCTGCTGT GCGTGAACAT GCAGACCAGC TTCATGCACC CGCCCTTCGG CTTCGCCCTC
TTCTACCTGC GCGGCATCGC CGACACGCTG TTCAAGGAAA AGCGCATCGA CCGGCCGGTG
AAATCGAGCG ACATCTACAT GGGCTCCATC CCGTGGGTGG TGATGCAGCT GATCCTCGTG
GCGATCGTGA TCTTCTTCCC GCAGACCGTG ACCATCTTCC TCGACAAGGA AAAGGTGGTC
GATCTGGACA AGGTGCAGCT CGACATGCCC GCGGACAGCT CGGCGGAACC GACCATCAAC
ATGGACGACC CCTTCGGCAC CGGCAAACCC GCGGACGGCG CCTCGGACGC CCCGGGCGCG
GAGCCCGCGA TGCCGATGCC GGAACCGATG CCGGAACCGA TGCCCGAGCC GGCGGCGCCG
GAAGGCGCGG CCAGCACGCC GCGATGA
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| Protein sequence | MHMENFAPIM FAGLIVIMLI GFPVAFSLAA LGLFSGFFAI EMGWFPANFM ANLPINMFGI
LSNDLLLAIP FFTLMGAVLE KCGLAEDMLD SMGQLFGPVR GGLGYSVIIV GFILGAITGT
VAGQVIAMAM ISLPVMMRYN YNMRYATGVL AASGTITQLV PPSLVLIVMA DQLGRSVGDM
YKGAWGPAIL QVLIFAIYTF LLGRIRPEYV PGLPKSARTL HGWALWGKCL RGIIPSAILI
FAVLGSMGGL PFMDHAIATP TEAGAMGAVG SLILAAIHKR LTWKLIKEAM DGTMRLTAMV
VFILIGSRVF SLVFQGVDGA IWIEHMLSDL PGGQIGFLIV VNLFIFFLAF FLDFFEIAFI
ILPLLGPVAH KLGIDLVWFG VLLCVNMQTS FMHPPFGFAL FYLRGIADTL FKEKRIDRPV
KSSDIYMGSI PWVVMQLILV AIVIFFPQTV TIFLDKEKVV DLDKVQLDMP ADSSAEPTIN
MDDPFGTGKP ADGASDAPGA EPAMPMPEPM PEPMPEPAAP EGAASTPR
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