| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2012 |
|---|
| Symbol | |
|---|
| ID | 4669163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 2187792 |
|---|
| End bp | 2188931 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639823223 |
|---|
| Product | Rieske (2Fe-2S) domain-containing protein |
|---|
| Protein accession | YP_970370 |
|---|
| Protein GI | 120610692 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.314134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00922772 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGATT TAAGTCTTCA ACTGCAGCAG GCCGCAAGCC AACTACCAGT TTCAAGCTAT
TTCGATGATG CGCTGTTCCG GCGCGAGCTG GACACCATCT TTCAGCGCGG GCCCCGCTAT
GTGGGGCACC AGCTGAGCGT GCCCGAACCG GGCGATTATT ACGCGCTGCC GCAGGAAGGA
CAGGGCCGTG CCCTGGTGCG CAACGCGCAG GGTGGCATCG AACTGGTCTC CAACGTGTGC
CGCCACCGCC AGGCGGTGAT GCTGCAGGGC CGGGGCAACC TGCGCACGAA CGGCAAGGGC
CACGCCGCGG GGAACATCGT CTGCCCGCTG CACCGGTGGA CGTACTCGCC CCAGGGCGAA
CTGCTGGGCG CGCCGCACTT CTCGCACGAC CCCTGCCTGA ACCTGAACAA CTACCCGCTG
CGCGAGTGGA ACGGCCTCCT CTTCGAGGAC AACGGCCGCG ACATCGCCGC CGACCTCGCC
GGCATGGGCC CGCGCTCGGA GCTGTCGTTC GACGGCTACG TGCTCGACAA GGTCGAACTG
CACGAGTGCA ACTACAACTG GAAGACCTTC ATCGAGGTCT ATCTGGAGGA CTACCACGTG
GGCCCGTTCC ATCCGGGGCT GGGCAACTTC GTCACCTGCG ACGACCTGCG CTGGGAGTTC
CAGAAGCACT ATTCCGTGCA GACCGTGGGC GTGGCCTCCA CGTTCGGCAA GCCCGGCTCG
GACGTGTACC GGAAATGGCA CGAGGTGCTG CTGAACTACC GCGAGGGCCG CATGCCCGAG
CGCGGCGCGA TCTGGCTCAC CTACTACCCC CACATCATGG TGGAGTGGTA TCCGCACGTG
CTCACCGTGT CCACGCTGCA CCCCGTCAGC CCGACGAAGA CACTCAACGT GGTGGAGTTC
TACTACCCCG AGGAGATCGC CGCCTTCGAG CGCGAGTTCG TCGAGGCGCA GCAGGCGGCC
TACATGGAAA CCTGCATCGA GGACGACGAG ATCGGCGAGC GCATGGATGC GGGGCGCCGG
GCGCTGTTCG ACCGCGGCGA CAACGAGGTG GGCCCCTACC AGAGCCCGAT GGAAGACGGC
ATGCAGCACT TCCACGAGTG GTACCGGGAC GCCATGGGCG CCGCCGTCCC GCGGGACTGA
|
|---|
| Protein sequence | MSDLSLQLQQ AASQLPVSSY FDDALFRREL DTIFQRGPRY VGHQLSVPEP GDYYALPQEG
QGRALVRNAQ GGIELVSNVC RHRQAVMLQG RGNLRTNGKG HAAGNIVCPL HRWTYSPQGE
LLGAPHFSHD PCLNLNNYPL REWNGLLFED NGRDIAADLA GMGPRSELSF DGYVLDKVEL
HECNYNWKTF IEVYLEDYHV GPFHPGLGNF VTCDDLRWEF QKHYSVQTVG VASTFGKPGS
DVYRKWHEVL LNYREGRMPE RGAIWLTYYP HIMVEWYPHV LTVSTLHPVS PTKTLNVVEF
YYPEEIAAFE REFVEAQQAA YMETCIEDDE IGERMDAGRR ALFDRGDNEV GPYQSPMEDG
MQHFHEWYRD AMGAAVPRD
|
|---|
| |