| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1972 |
|---|
| Symbol | |
|---|
| ID | 4666156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 2141769 |
|---|
| End bp | 2142482 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639823182 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_970330 |
|---|
| Protein GI | 120610652 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0560] Phosphoserine phosphatase |
|---|
| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0197287 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCCG ACACTCCGGC CTCCCCAGAT CGCCGCCCCC GGCTCGCGCT CTTCGACCTG
GACCACACGC TTTTGCCGCT CGACTCCGAC TACGAGTGGG GCGAGTTCAC CATCCGCATC
GGCTGGAACG ACCGCACCGA ATTCGGGCGC CGCAACAAGG AGTTCTACGA CCACTACGTG
GCCGGCACGC TGAATGTGCA CGACTATGTG CGCTTCGCAG TGGATGCGGC GCGCCGGCAC
GGGCCCGAGG CGGCCGCGGC GGCGCACGCG CAGTTCATGC GCGAGGTCAT CGGCCCGGCC
ATCCTGCCGC AGGCGCTCGA CCTGCTGCGT ACCCACCAGG GCGCAGGCGA CGAGGTCGTC
ATCATCACGG CCACCAACGA GTTCGTCACC GCCCCGATCG CGCAGGCCCT GGGCGTGGAA
CAACTGCTGG CCGTGGAGCT CGAGCGCGAC GGGAGCGGCT GGATCACCGG CGGCATCCGC
GGTGTGCCCT CCATGCGCGA AGGCAAGGTG CAGCGCATGG AACAATGGCT GTCCGCCCGC
GGCTGGACCT GGAGCGATGT GGAAAGCACT TTCTACAGCG ATTCCATGAA CGACGTGCCC
CTGCTCGAAA AAGTCGACCA TCCCGTCGCC ACCAACCCCG ACCCCCGCCT GCGCGCACTG
GCGCAGCAGC GCGGCTGGCG CATCCTGGAC CTGTTTTCTA CGCCAACACC ATGA
|
|---|
| Protein sequence | MTPDTPASPD RRPRLALFDL DHTLLPLDSD YEWGEFTIRI GWNDRTEFGR RNKEFYDHYV
AGTLNVHDYV RFAVDAARRH GPEAAAAAHA QFMREVIGPA ILPQALDLLR THQGAGDEVV
IITATNEFVT APIAQALGVE QLLAVELERD GSGWITGGIR GVPSMREGKV QRMEQWLSAR
GWTWSDVEST FYSDSMNDVP LLEKVDHPVA TNPDPRLRAL AQQRGWRILD LFSTPTP
|
|---|
| |