| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1966 |
|---|
| Symbol | |
|---|
| ID | 4668809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 2136086 |
|---|
| End bp | 2137075 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639823176 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_970324 |
|---|
| Protein GI | 120610646 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.327518 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.02017 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGCG ACCGGCCCGG CCCGATCCAC GTCGTCTTCG CCTTGCTGCC CCACAGCCTG
GTACTGGACT GGGCCGGCCC GGCGGAAGCG CTGCGCATCG CCAACCAGTG CCTGCACGCG
CAGGGGCTGC CCGAGCGTTT CGTGCTGCGC TTCGCGAGCC CCACGCCGCA ATCGGTGACT
TCGGTCGGCG CTGTGCTCAG CGGACTGGAG CCCCTGCCCA CGGCATGGCC TGCCGCCGCC
TGGGTGGTTC TGATCGGCCT GCCCGGCGCG GCGATCGACG TGGCGACCGC AGAGGCCCGC
GCGCTGCTGC ACTGGCTGCG CGGCCTGCGG CCGGAACGGA GACGGCTCGA ACTGCTGACC
ATCTGCGCGG GCTCGGTGCT CGCGGCCCAT GCCGGGCTGC TCGCGGGCCG TCGCGCCACC
ACGCACCACC AGCACCTCGC GGAGCTGCAG CAGGTGGAAC CGCGCTGCGA CGTGGTGGCC
AACCGGGTCT TCGTGCCGGA TGCCCCGCTC TACAGCAGCG CGGGCGTCAC CACCGGCATC
GATCTCGTGC TGCACCGCAT CGCGGACGAA TGCGGCCCGG CCATCGCCGC GCAGGTGGCT
CAGACCATGG TGGTGGCGTT GCGGCGCGGC CCCCACGACC CGGAGTTCTC GCCGTTTCTC
GCCCACCGCA ACCACCTGCA CCCGGCGCTC CACCGCGTGC AGGACGCGGT GTCGCAGCAC
CCGGCCGGAG ACTGGAGCGT TCCGGCCATG GCCGAGGTCG CGCATGCATC GCCCCGCCAT
CTCACCCGCC TGTTCATCGA CCATGCGGGC ATCGCCCCCC TGGCCTGGCT GCGCACCATC
CGGCTGGCCA CGGCCGAGGC GGCACTGAAC ACCGGCCACA CGGTGACGCA GGCCGCGGCC
CTGGCCGGCT TCAGTTCGGA CACTCAGCTG CGCCGGGCAT GGCACCGGTT CGGGCGCGGC
GGTACGCCGT CGGAGCCGGC CCGCGCCTGA
|
|---|
| Protein sequence | MNGDRPGPIH VVFALLPHSL VLDWAGPAEA LRIANQCLHA QGLPERFVLR FASPTPQSVT
SVGAVLSGLE PLPTAWPAAA WVVLIGLPGA AIDVATAEAR ALLHWLRGLR PERRRLELLT
ICAGSVLAAH AGLLAGRRAT THHQHLAELQ QVEPRCDVVA NRVFVPDAPL YSSAGVTTGI
DLVLHRIADE CGPAIAAQVA QTMVVALRRG PHDPEFSPFL AHRNHLHPAL HRVQDAVSQH
PAGDWSVPAM AEVAHASPRH LTRLFIDHAG IAPLAWLRTI RLATAEAALN TGHTVTQAAA
LAGFSSDTQL RRAWHRFGRG GTPSEPARA
|
|---|
| |