| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1916 |
|---|
| Symbol | |
|---|
| ID | 4665453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 2074331 |
|---|
| End bp | 2076787 |
|---|
| Gene Length | 2457 bp |
|---|
| Protein Length | 818 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639823126 |
|---|
| Product | ATP-dependent DNA helicase UvrD |
|---|
| Protein accession | YP_970274 |
|---|
| Protein GI | 120610596 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.28639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00561083 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCCAC ACGACCTGTT TTCCGGCGCG CCAGCGCCCT TCGGCGCTGC CGAGCCGGGC
CCGGCCTCGC CGTCGGCGGC CGCATCGCCC CTGCTGCAGA ACCTGAACGA CGAGCAGCTT
GCCGCCGTCA CGCTGCCCGC GGGCCACGCC CTGATCCTGG CCGGCGCGGG CTCCGGCAAG
ACCCGCGTGC TCACCACGCG CATCGCCTGG CTGCTGCAGA ACGGCTATGC CTCGCCCGGC
AGCATCCTGG CCGTCACCTT CACCAACAAG GCCGCCAAGG AAATGACCGC GCGCCTCTCG
GCCATGCTGC CGGTGAACGT GCGCGGCATG TGGATCGGTA CCTTCCACGG CCTGTGCAAC
CGGCTGCTGC GCGCCCACCA CAAGTCGGCA GGGCTGCCCG CCACCTTCCA GATCCTGGAC
ACGCAGGACC AGCTCTCGGC CGTGAAGCGG CTGTGCAAGC AGTTCAACAT CGACGAGGAG
CGCTTTCCCC CGAAGCAGAT GGCCTACTTC ATCAGCGGCT GCAAGGAAGA GGGCCTGCGG
CCCGGCGACG TGGATGCGCG CGATGCGGAC GGGCGCAAGA AGGTGGAGCT CTACCAGCTG
TACGAGGAGC AGTGCCAGCG CGAGGGCGTG GTGGACTTCG GCGAGCTGAT GCTGCGCAGC
TACGAACTGC TGCGCGACAA CGATCCGATC CGCGCGCACT ACCAGCGGCG CTTCCAGCAC
ATCCTGGTGG ACGAGTTCCA GGACACGAAC AAGCTGCAGT ACGCCTGGCT CAAGCAGATC
GCGGGCGACG TGGTGGACGG CCGCCTCGTC ACGCATGGCA GCGTGCTGGC GGTGGGCGAC
GACGACCAGA GCATCTACGC GTTCCGCGGC GCGCGGGTGG GCAACATGCA GGACTTCGTG
CGCGAGTTCG ACGTGCGCCA CCAGATCAAG CTGGAGCAGA ACTACCGCAG CTACAGCAAC
ATCCTCGATT CGGCCAACGC CCTCATCAGC CACAACAGCC GCCGCCTGGG CAAGAACCTG
CGCACCACGC AGGGGCCGGG CGAGCCGGTG CGCGTCTATG AAGCGCCCAC CGACCTGGCG
GAAGCGCAAT GGATGGTGGA CGAGATCCGC CAGCTCGCGC GCAATGACGG CTTCGAGCGG
CGCGAGATCG CCGTGCTCTA CCGCAGCAAC GCGCAAAGCC GGGTGATCGA GTCGGCGCTG
TTCAATGCCG CGGTGCCCTA CCGCGTGTAC GGCGGCCTGC GCTTTTTCGA GCGGGCGGAA
ATCAAGCATG CGCTGGCCTA CCTGCGCCTG CTGGAGAACC CGCACGACGA CACGAGCTTC
ATGCGCGTGG TGAACTTCCC GCCGCGCGGC ATCGGGGCGC GCACGGTCGA GGTGCTGCAG
GACGCGGCAC GGCAGGCCGG CTGCTCGCTG CACGATGCCG TGAGCGCCGT GCCCGGCAAG
GCGGGGGCGA ACCTGGGCGC CTTCGTCGCC ATGGTGGATG TGATGCGCGA GCAGACGCAG
GGCCAGACGC TGCGCGGCAT CATCGGCCAG ATGCTCGAAT CGAGCGGACT GGTGGAGCAC
TACCGTGCCG AAAAGGAAGG CGCGGACCGT CTGGAGAACC TGGACGAACT GATCAATGCC
GCCGAGAGCT TCGTCACGCA GGAAGGATTC GGCCGCGACG CCGTCGCGCT GCCGGTGGAC
GAACACGGCG CCAGCCTGCG CCAGAGCCCG GCGAGCCAGG GCATCGATCC CTCGTTGCCC
GTGGTGGATG AACCGCTGCC GGGCGGCGTG GATGCCGACA CCGGCGAGAC GCTGTCACCC
CTGGCCGCCT TCCTCACGCA CGCCGCGCTG GAAGCCGGCG ACAACCAGGC CCAGGCCGGG
CAGGATGCCG TGCAGCTCAT GACCGTGCAT GCCTCCAAGG GGCTGGAGTT CGATGCCGTG
TTCATCGGCG GCATGGAGGA GGGCCTGTTC CCGCACGAGA ACTCCATGAG CGACCGGGAC
GGCCTGGAGG AGGAGCGCCG CCTGATGTAC GTGGCGATCA CGCGCGCGCG CAAGCGGCTC
TACCTGAGCC ATTCGCAGAC CCGGCTGCTG CACGGGCAGA CGCGCTACAA CATCAAGAGT
CGCTTCTTCG ACGAGCTGCC CGAGGCGGCG CTGAAATGGA TCACGCCCAA GCAGCAGGGC
TTCGGCAGCT TCGCGCCGCA GTCCGGCGGA CGGGGCGGGA GTGCGGGGAC GCCGTGGGGC
GGCTTCGGGT CGGGCGGCAA ATCAGAGACC TTCGCGAGCC CGCCCGTGCC GGCGCAGAAG
GCGCCGCCCG CGCATGGGCT GCGCGTGGGG CTGGCGGTGT TCCACACCAA GTTCGGCGAG
GGCAAGGTGC TGTCGCTCGA AGGCTCGGGC GACGATGCGC GCGCGCAGGT GAACTTCCCG
CGGCACGGCA CCAAGTGGCT GGCGCTGTCC GTGGCCAAGC TGACGGTGGT GGACTGA
|
|---|
| Protein sequence | MLPHDLFSGA PAPFGAAEPG PASPSAAASP LLQNLNDEQL AAVTLPAGHA LILAGAGSGK
TRVLTTRIAW LLQNGYASPG SILAVTFTNK AAKEMTARLS AMLPVNVRGM WIGTFHGLCN
RLLRAHHKSA GLPATFQILD TQDQLSAVKR LCKQFNIDEE RFPPKQMAYF ISGCKEEGLR
PGDVDARDAD GRKKVELYQL YEEQCQREGV VDFGELMLRS YELLRDNDPI RAHYQRRFQH
ILVDEFQDTN KLQYAWLKQI AGDVVDGRLV THGSVLAVGD DDQSIYAFRG ARVGNMQDFV
REFDVRHQIK LEQNYRSYSN ILDSANALIS HNSRRLGKNL RTTQGPGEPV RVYEAPTDLA
EAQWMVDEIR QLARNDGFER REIAVLYRSN AQSRVIESAL FNAAVPYRVY GGLRFFERAE
IKHALAYLRL LENPHDDTSF MRVVNFPPRG IGARTVEVLQ DAARQAGCSL HDAVSAVPGK
AGANLGAFVA MVDVMREQTQ GQTLRGIIGQ MLESSGLVEH YRAEKEGADR LENLDELINA
AESFVTQEGF GRDAVALPVD EHGASLRQSP ASQGIDPSLP VVDEPLPGGV DADTGETLSP
LAAFLTHAAL EAGDNQAQAG QDAVQLMTVH ASKGLEFDAV FIGGMEEGLF PHENSMSDRD
GLEEERRLMY VAITRARKRL YLSHSQTRLL HGQTRYNIKS RFFDELPEAA LKWITPKQQG
FGSFAPQSGG RGGSAGTPWG GFGSGGKSET FASPPVPAQK APPAHGLRVG LAVFHTKFGE
GKVLSLEGSG DDARAQVNFP RHGTKWLALS VAKLTVVD
|
|---|
| |