| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1829 |
|---|
| Symbol | |
|---|
| ID | 4665566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 1982450 |
|---|
| End bp | 1983628 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639823031 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_970187 |
|---|
| Protein GI | 120610509 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.487649 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAC GCCTTACCGT CCTGGGTTCC ACCGGCTCCA TCGGAACCAG TACCCTGGAC
GTGGTCGCGC GCCACCCCGG CCGCTACGAG ATCTTCGCGC TGAGCGCCGC CACGCAGGTG
GACGCCATGG CGGCGCAGTG CCTGCGCTTT GGTCCGCGCT ACGCGGTCAT GGCGAGCCCG
GAGCATGCCC GCGCGCTGCG GGAGGCACTG GCCGCGCAGG GGTCGTCCAC CGAGGTGATG
GACACCCCCG ATGCCCTGCA GGCGATCTCC GCCCATCCCG AGGTGGACGT GGTCATGGCG
GCCATCGTCG GCGCCGCCGG GCTCGCTCCC TGCCTGGCCG CCGCGCGCGC GGGCAAGCGC
CTGCTGCTGG CGAACAAGGA AGCGCTGGTC GTGGGCGGCG AGGTGTTCAT GTCCGCGGTG
CGCGAGGGCG GCGCCACGCT GCTGCCCATC GACAGCGAGC ATTCCGCCAT CTTCCAGTGC
CTGCCGGAGG ATGCGTCCTC CTGGCCGCGG CGCGTGGACC ACATCCTGCT CACCGCGTCC
GGCGGCCCGT TCCGCACGCG CGAGCCCGCC ACCCTGCGCG ACGTGACACC CGAGCAGGCC
TGTGCCCATC CCAACTTCTC CATGGGGCGC AAGATCTCGG TGGATTCCGC GACCATGATG
AACAAGGCGC TGGAAGTGAT CGAGGCGCGC TGGCTGTTCA ATCTGGCGCC GGAACAGATC
CAGGTGGTCA TCCATCCGCA GCAGATCATC CATTCGATGG TGCAGTTCAA GGACGCCTCG
GTGCTGGCCC AACTGGGCAC GCCCGACATG CGCGTGCCCA TCGCCTGCGG CCTCGCCTGG
CCCGAGCGCA TCGAGAGCGG CACGCCCCGG CTCGATTTCC GCAGCCTGGC CGCCCTGACC
TTCGAGGAAG CCGACGCCAC GCGCTTTCCC GGGCTGCACC TGTCGTGGCA GGCCCTGCGT
GCCGCGCCGG GCACCACCGC GGTGCTCAAT GCGGCCAACG AGGTGGCGGT GGCGTCGTTC
CTGGAACGCC GCATCCGCTT CGACCAGATC CACCGGCTGA ATCTTGCAAC TCTGGAGGCG
GTATCGCCCT CCAACCCGGA CTCGCTGTGC GCATTGCTCG ACCTCGACGC CCAGGCGCGT
TCGGTCGCGC GGCACCGGGC AGAGCGGCTC GCGGCCTGA
|
|---|
| Protein sequence | MKQRLTVLGS TGSIGTSTLD VVARHPGRYE IFALSAATQV DAMAAQCLRF GPRYAVMASP
EHARALREAL AAQGSSTEVM DTPDALQAIS AHPEVDVVMA AIVGAAGLAP CLAAARAGKR
LLLANKEALV VGGEVFMSAV REGGATLLPI DSEHSAIFQC LPEDASSWPR RVDHILLTAS
GGPFRTREPA TLRDVTPEQA CAHPNFSMGR KISVDSATMM NKALEVIEAR WLFNLAPEQI
QVVIHPQQII HSMVQFKDAS VLAQLGTPDM RVPIACGLAW PERIESGTPR LDFRSLAALT
FEEADATRFP GLHLSWQALR AAPGTTAVLN AANEVAVASF LERRIRFDQI HRLNLATLEA
VSPSNPDSLC ALLDLDAQAR SVARHRAERL AA
|
|---|
| |