| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1580 |
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| Symbol | |
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| ID | 4667470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 1743583 |
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| End bp | 1747074 |
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| Gene Length | 3492 bp |
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| Protein Length | 1163 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639822782 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_969943 |
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| Protein GI | 120610265 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.484817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCTCC CCAAACTCAT CCCCGGCAAA CGTTTCACCA TGCCGCGCCC CGTGGGCAGC
GCCGACGCCC TGCTGCTCGC GCGCGTCGCG GAGCGCGAGA AGGCCGCCCG GCGCACCACC
GCCATCGTCA CGGCCGACGC CACCGACGCG CAGCGCCTGA TCGACGAGAT GGCGTTCTTC
GCGCCCGAAC TGCGCTGCGC GCTGTTTCCC GACTGGGAAA CGCTGCCCTA CGACACCTTC
TCGCCGCACC AGGACCTCAT CAGCGAGCGC CTGGCCACGC TCTGGCGCAT CAGCCAGAAG
GACCGGGACA CCGGCGCCGA CGTGGTGCTG GTGCCGGCCA CCACGGCGCT CTACCGCCTC
GCGCCCCCCT CGTTCCTCGC GGCCTACACC TTCCATTTCA AGGTCAGGCA GAAGCTGGAC
GAGGCGAAGT TCCGCGCCCA GCTCACGCTG GCCGGCTACA GCCACGTCTC GCAGGTGGTG
AGCCCCGGCG AATACGCAGT GCGCGGCGGC CTGATCGACC TGTTCCCCAT GGGCTCGCCC
GTGCCCTACC GGGTGGACCT GTTCGACGAC GAGATCGACT CCATCCGCAC TTTCGATCCC
GACACGCAGC GCAGCCTGTA TCCCGTGCCG GAAGTGCGCC TGCTGCCCGG CCGCGAGTTC
CCCATGGACG ATGCGGCCCG GGCCAAGTTC CGCAGCCGCT GGCGCGAGCT GCTGGAGGGC
GACCCGACCA AGAGCCGCAT CTACAAGGAC ATGGGCAACG GCGTGGCCAC CGCCGGCATC
GAGTACTACC TGCCGCTCTT CTTCGACGAG ACGGCCACCG TGTTCGACTA TCTTGGAGAG
GACGCCACCG TGGTGCTGCA CGGCGACCTG GAGCCGGCTT TCCAGCGCTT CTGGCACGAC
ACGAAGGAGC GCTTCCGCCT GGTGCAGGGC GACCCCGACC GGCCCGCACT GCCGCCCGAG
TCGCTGTTCC TGGGCATCGA GCAGTTCTAC ACCCGCGCCA ACGTGCATGC GCAGCTCGCG
CTGCGGCCGG GCGTGGAGGA CGTGGCCGAC AACGCTGACT TCCAGAAGCT GGGCGATCTG
TCGGTGGTGC GGGGCGCCGA GGATCCGCTG GCGCGCCTGC ATGCGCACAT CCGCGACACG
CGGCACCGGG TGCTGCTGCT GGCCGAGAGC GACGGCCGGC GCGAGAGCCT GCTGGACTTC
CTGCGCGCCT CGCAGCTGAA CCCGCCGGCC TTCGATTCGC TGGCCGAGTT CCAGGGCCAG
GCTGACGAGA AGGTCGGCAT CGCCACCGCC GCCCTGGCCA CGGGCTTCGC CTGGGTCGGG
GAAGGCATCG ACTTCGTCAC CGAGACCGAG CTGTTCGCGG CCGGCGCCAC CACGCGCCGG
CGCAAGAAGC AGGAGCAGGT GAGCGATGTC GAGGCGCTCA TCAAGGATCT GTCGGAACTC
ACGCTGGGCG ACCCGGTGGT GCACAGCGCG CACGGCATCG GCCGCTACCG GGGCCTGATC
CACATGGACG TGGGCCAGAA GAACCCCGAC GGCACGCCCG CGATGCAGGA GTTCCTGCAC
CTCGAATACG CCGACAAGGC CGTGCTGTAC GTGCCGGTGA GCCAGCTGCA GCTCATCAGC
CGCTACACGG GCGTGTCCGC CGACGAGGCG CCGCTGCACA AGCTGGGCAG CGGCCAATGG
GAGAAGGCCA AGCGCAAGGC CGCAGAGCAG GTGCGCGATT CCGCCGCCGA GCTGCTCAAC
ATCTACGCCC GCCGCGCGGC GCGCGAGGGC CACGCCTTCC GCTACAGCCC GCAGGACTAC
GAGCAGTTCG CCAACGATTT CGGGTTCGAG GAAACGGCCG ACCAGAACGC CGCCATCCAC
GCGGTGATCC AGGACATGAT CTCGCCCCGC CCCATGGACC GGCTGGTCTG CGGCGACGTG
GGCTTCGGCA AGACCGAGGT GGCACTGCGC GCCGCCTTCG TGGCCGTCAC CGGCGGCAAG
CAGGTGGCGT TCCTCGCGCC GACCACGCTG CTGGCCGAGC AGCACTACCA GACGCTGGTG
GACCGCTTCT CCAAGTGGCC GGTGAAGATC GCGGAGGTCT CGCGCTTCCG CTCGGGCAAG
GAGATCACGG CGGCCATCAA GGGCATCGGC GACGGCACGG TGGACATCGT GGTGGGCACG
CACAAGCTGC TTTCCGAATC CACGAAGTTC CACAACCTGG GCCTGCTCAT CATCGACGAG
GAGCACCGCT TCGGGGTGCG CCACAAGGAG CAGATGAAGC AGCTGCGCGC CGAGGTGGAC
GTGCTCACGC TCACCGCCAC GCCCATCCCG CGCACGCTGG GCATGGCGCT GGAAGGCCTG
CGCGACCTGT CGGTGATCGC CACCGCGCCG CAGCGGCGCC TGGCGATCAA GACCTTCGTG
CGCAACGAGG GCACGGGCGT GATCCGCGAG GCGGTGCTGC GCGAATTGAA GCGCGGGGGC
CAGTGCTACT TCCTGCACAA CGAGGTCGAG ACGATCGAGA ACCGGCGCCA GAAGCTCGAG
GAGATATTGC CCGAGGCGCG CATCGCCGTG GCCCACGGCC AGATGCCCGA GCGCGAGCTG
GAGAAGGTGA TGCGCGACTT CGTGGCGCAG CGCTACAACA TCCTGCTGTG CTCGACCATC
ATCGAGACCG GCATCGACGT GCCCACGGCC AACACCATCA TCATGAGCCG CGCCGACAAG
TTCGGCCTGG CGCAGCTGCA CCAGCTGCGC GGCCGCGTGG GCCGCAGCCA CCACCAGGCC
TATGCCTACC TGATGGTGCC GGACGTGGAC GGCCTGACCA AGCAGGCCGC CCAGCGGCTG
GACGCCATCC AGCAGATGGA GGAACTGGGC TCGGGCTTCT ACCTCGCCAT GCACGACCTG
GAGATCCGCG GCGCGGGCGA GGTACTGGGC GAGAGCCAGA GCGGCAACAT GCTGGAGGTG
GGCTTCCAGC TCTACAACGA GATGCTGGCC GAGGCCGTGA AGTCGCTCAA GGCCGGCAAG
GAGCCCGACC TGCTCGCGCC GCTGTCTGTC ACCACGGACA TCAACCTGCA TGCGCCGGCC
CTGCTGCCCG ACGACTACTG CGGCGACGTG CACCTGCGGC TGTCGTTCTA CAAGAAGCTC
GCCACCGCGA AGACCGCGGA CCAGATCGAC GCCCTGCTCG AAGAAATCGT GGACCGCTTC
GGCAAGCTGC CGCCGCAGGC GCAGACGCTG ATCGACGTGC ACCGGCTGCG CGTGCTGTCG
CAGCCCTACG GGGTCATCAA GGTGGATGCG GCACCGGGCG TGACGAACAT CACGTTCCGG
CCCCAGCCGC CGGTGGACCC GATGCAGATC ATCCACCTGA TCCAGAAAAA TAGGCACATC
AAGCTCGCGG GCAACGAAAA GCTGCGCATC GAGCGCGAAC TGCCGGACGC GAAAGACCGG
GCGCAGATGG TGCGCGACGT GCTGCGCAGC CTGGGCCAGC CCCTGGGGGC TGCGCAGGGC
GCTCCGGCCT GA
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| Protein sequence | MDLPKLIPGK RFTMPRPVGS ADALLLARVA EREKAARRTT AIVTADATDA QRLIDEMAFF
APELRCALFP DWETLPYDTF SPHQDLISER LATLWRISQK DRDTGADVVL VPATTALYRL
APPSFLAAYT FHFKVRQKLD EAKFRAQLTL AGYSHVSQVV SPGEYAVRGG LIDLFPMGSP
VPYRVDLFDD EIDSIRTFDP DTQRSLYPVP EVRLLPGREF PMDDAARAKF RSRWRELLEG
DPTKSRIYKD MGNGVATAGI EYYLPLFFDE TATVFDYLGE DATVVLHGDL EPAFQRFWHD
TKERFRLVQG DPDRPALPPE SLFLGIEQFY TRANVHAQLA LRPGVEDVAD NADFQKLGDL
SVVRGAEDPL ARLHAHIRDT RHRVLLLAES DGRRESLLDF LRASQLNPPA FDSLAEFQGQ
ADEKVGIATA ALATGFAWVG EGIDFVTETE LFAAGATTRR RKKQEQVSDV EALIKDLSEL
TLGDPVVHSA HGIGRYRGLI HMDVGQKNPD GTPAMQEFLH LEYADKAVLY VPVSQLQLIS
RYTGVSADEA PLHKLGSGQW EKAKRKAAEQ VRDSAAELLN IYARRAAREG HAFRYSPQDY
EQFANDFGFE ETADQNAAIH AVIQDMISPR PMDRLVCGDV GFGKTEVALR AAFVAVTGGK
QVAFLAPTTL LAEQHYQTLV DRFSKWPVKI AEVSRFRSGK EITAAIKGIG DGTVDIVVGT
HKLLSESTKF HNLGLLIIDE EHRFGVRHKE QMKQLRAEVD VLTLTATPIP RTLGMALEGL
RDLSVIATAP QRRLAIKTFV RNEGTGVIRE AVLRELKRGG QCYFLHNEVE TIENRRQKLE
EILPEARIAV AHGQMPEREL EKVMRDFVAQ RYNILLCSTI IETGIDVPTA NTIIMSRADK
FGLAQLHQLR GRVGRSHHQA YAYLMVPDVD GLTKQAAQRL DAIQQMEELG SGFYLAMHDL
EIRGAGEVLG ESQSGNMLEV GFQLYNEMLA EAVKSLKAGK EPDLLAPLSV TTDINLHAPA
LLPDDYCGDV HLRLSFYKKL ATAKTADQID ALLEEIVDRF GKLPPQAQTL IDVHRLRVLS
QPYGVIKVDA APGVTNITFR PQPPVDPMQI IHLIQKNRHI KLAGNEKLRI ERELPDAKDR
AQMVRDVLRS LGQPLGAAQG APA
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