| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1506 |
|---|
| Symbol | |
|---|
| ID | 4667526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 1668470 |
|---|
| End bp | 1670329 |
|---|
| Gene Length | 1860 bp |
|---|
| Protein Length | 619 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639822708 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_969869 |
|---|
| Protein GI | 120610191 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.189174 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCAT ACCGTTCCAA GACCTCCACT GCCGGACGCA ACATGGCCGG TGCCCGCTCC
CTGTGGCGCG CCACCGGCAT GAAGGACGAA GACTTCAGCA AGCCGATCAT CGCGGTGGTG
AACTCGTTCA CCCAGTTCGT GCCCGGCCAC GTCCACCTGA AGGACCTGGG CCAGCTCGTG
GCCCGCGAGA TCGAGGCGGC CGGCGGTGTC GCCAAGGAGT TCAACACCAT CGCGGTGGAT
GACGGCATCG CGATGGGCCA CGACGGCATG CTGTATTCGC TGCCCAGCCG CGACATCATC
GCGGACTCGG TCGAGTACAT GGTGAACGCG CACTGCGCCG ACGCCATGGT CTGCATCTCC
AACTGCGACA AGATCACGCC CGGCATGCTG ATGGCCGCGA TGCGCCTGAA CATCCCCGTG
GTGTTCGTCT CCGGCGGCCC CATGGAGGCC GGCAAGACGC GCCTGGCCAA CCCCGTCACC
AAGACCATCG AGTTCAAGAA GCTCGACCTG GTGGACGCGA TGGTGATCGC CGCCGACGAC
AAGTATTCCG ACGCCGACGT GGCCGAGGTG GAGCGCTCCG CCTGCCCCAC CTGCGGTTCG
TGCTCGGGCA TGTTCACCGC CAATTCCATG AACTGCCTGA CCGAGGCGCT GGGCCTGTCC
CTGCCCGGCA ACGGCACGGT GGTGGCCACG CACGCCGACC GCGAGCAGCT CTTCAAGCGC
GCCGGCCGCC GCATCGTGGA ACTGGCCCGC CGGTACTACG AGCAGGACGA CGAGCGGGTT
CTGCCGCGCT CGGTGGGCTT CAAGGCCTTC GAGAACGCGA TGACGCTGGA CATCGCGATG
GGCGGCTCCA CCAACACCAT CCTGCACCTG CTGGCCATCG CCCAGGAGGC CGGCATCGAC
TTCACCATGG CCGACATCGA CCGCCTGTCG CGCGTGGTGC CGCAGCTGTG CAAGGTGGCG
CCCAACACCA ACAAGTACCA CATCGAGGAC GTGCACCGCG CCGGGGGCAT CATGGCCATC
CTGGGCGAAC TGGACCGCGC GGGCCGCCTG CACACCGATG CGCCCACCGT GCACGCCCCC
ACGCTGGGCG ACGCGCTCGC GCAGTGGGAC ATCACCCGCA CGCAGGACGA GGCCGTGCGC
CATTTCTACA TGGCGGGCCC GGCCGGCATC CCGACGCAGG TGGCGTTCAG CCAGAACACG
CGCTGGCCCA GCCTGGACCT GGACCGCGCC GAGGGCTGCA TCCGCTCCGT CGAGCATGCC
TTCTCGAAGG AAGGGGGCCT GGCCGTGCTG CGCGGCAACA TCGCGCTGGA TGGCTGCGTT
GTCAAGACGG CCGGCGTGGA CGAATCCATC CACGTGTTCG AGGGCACGGC CCACGTGACC
GAATCGCAGG ACGAGGCGGT GGAGAACATC CTGGCCGACA AGGTCAAGGC CGGCGACATC
GTCATCGTGC GCTACGAAGG CCCCAAGGGC GGCCCCGGCA TGCAGGAAAT GCTCTACCCG
ACCAGCTACA TCAAATCCAA GGGCCTGGGC AAGGCCTGCG CGCTGCTGAC CGACGGGCGC
TTCTCGGGCG GCACCTCGGG CCTTTCGATC GGCCACTGCT CGCCCGAGGC GGCGGCCGGC
GGCGCGATCG GCCTGGTGCA GAACGGCGAC CGCATCCGCA TCGACATCCC CAATCGCACG
ATCGACGTGC TGGTGTCCGA CGAGGAACTG GCCCGCCGCC GCGCCGAGCA GGATGCCAAG
GGCTGGAAGC CCGCGAAGCC GCGCCCGCGC AAGGTGTCGG CGGCGCTCAA GGCCTATGCC
AAGCTGGTGA TGTCGGCCGA CAAGGGCGCG GTGCGCGACC TGTCGCTGCT GGACGACTGA
|
|---|
| Protein sequence | MPAYRSKTST AGRNMAGARS LWRATGMKDE DFSKPIIAVV NSFTQFVPGH VHLKDLGQLV
AREIEAAGGV AKEFNTIAVD DGIAMGHDGM LYSLPSRDII ADSVEYMVNA HCADAMVCIS
NCDKITPGML MAAMRLNIPV VFVSGGPMEA GKTRLANPVT KTIEFKKLDL VDAMVIAADD
KYSDADVAEV ERSACPTCGS CSGMFTANSM NCLTEALGLS LPGNGTVVAT HADREQLFKR
AGRRIVELAR RYYEQDDERV LPRSVGFKAF ENAMTLDIAM GGSTNTILHL LAIAQEAGID
FTMADIDRLS RVVPQLCKVA PNTNKYHIED VHRAGGIMAI LGELDRAGRL HTDAPTVHAP
TLGDALAQWD ITRTQDEAVR HFYMAGPAGI PTQVAFSQNT RWPSLDLDRA EGCIRSVEHA
FSKEGGLAVL RGNIALDGCV VKTAGVDESI HVFEGTAHVT ESQDEAVENI LADKVKAGDI
VIVRYEGPKG GPGMQEMLYP TSYIKSKGLG KACALLTDGR FSGGTSGLSI GHCSPEAAAG
GAIGLVQNGD RIRIDIPNRT IDVLVSDEEL ARRRAEQDAK GWKPAKPRPR KVSAALKAYA
KLVMSADKGA VRDLSLLDD
|
|---|
| |