| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1221 |
|---|
| Symbol | |
|---|
| ID | 4665120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 1345758 |
|---|
| End bp | 1346831 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639822414 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_969586 |
|---|
| Protein GI | 120609908 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.725495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0144759 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG CAGTCCTGCC CGGCGACGGC ATCGGCCCCG AAATCGTGGC CGAGGCCGTG
AAGGTGCTCG AAACGCTCGA CCTTCCCTTC GAGATGGAAT CCGCCCTGGT CGGCGGCGCG
GCCTACGAGG CCCACGGCCA CCCCCTGCCC GAGTCCACGC TGACGCTCGC CCGGGAAGCC
GATGCCGTGC TGTTCGGCGC CGTGGGCGAC TGGAAGTACG ACAAGCTCGA CCGCCCGCTG
CGTCCCGAGC AGGCCATCCT GGGCCTGCGC AAGAACCTCG GCCTGTTCGC CAACTTCCGC
CCGGCGATCT GCTACGAGCA GCTCACGCAC GCCTCCAGCC TCAAGCCCGA ACTCGTCGCG
GGCCTGGACA TCCTCATCAT CCGGGAGCTG ACGGGCGACA TCTACTTCGG CCAGCCGCGC
GGCCGCCGCA CGGCCACCGA CGGGCATTTC CCCGGCGCCG AGGAAGCCTT CGACACCATG
CGCTACAGCC GCCCGGAGAT CGAGCGCATC GCGCACGTCG CCTTCCAGGC CGCGCGCAAG
CGCAGCAGGA AGGTCACGAG CGTGGACAAG GCCAACGTGC TGGAAACCTT CCAGTTCTGG
AAGGACGTGG TCACCGACGT GCACAAGGAA TACCCCGACG TGGAGCTGGA GCACATGTAC
GTGGACAACG CCGCCATGCA GCTGGTGAAG AAGCCCAAGG CCTTCGACGT GGTGGTGACG
GGCAACATGT TCGGCGACAT TCTTTCGGAC GAGGCCTCCA TGCTCACGGG TTCCATCGGC
ATGCTGCCTT CGGCCAGCCT GAACAGCAGG AACCAGGGCC TGTACGAGCC CAGCCACGGC
AGCGCGCCCG ACATCGCCGG CCAGGGCATC GCCAACCCGC TGGCCACCAT CCTGTCGGCC
GCCATGATGC TGCGCTTCAG CCTGAACCAG GAAGCCGCCG CCCAGCGCAT CGAAGCCGCC
GTGCAGAACG TGCTGGCCCA GGGCCTGCGC ACGCCCGACA TCTGGAGCGA GGGCACGACC
AAGGTCGGCA CGGCGCAGAT GGGCGATGCG GTGGTGAAGG CCCTGGCGCG CTGA
|
|---|
| Protein sequence | MKIAVLPGDG IGPEIVAEAV KVLETLDLPF EMESALVGGA AYEAHGHPLP ESTLTLAREA
DAVLFGAVGD WKYDKLDRPL RPEQAILGLR KNLGLFANFR PAICYEQLTH ASSLKPELVA
GLDILIIREL TGDIYFGQPR GRRTATDGHF PGAEEAFDTM RYSRPEIERI AHVAFQAARK
RSRKVTSVDK ANVLETFQFW KDVVTDVHKE YPDVELEHMY VDNAAMQLVK KPKAFDVVVT
GNMFGDILSD EASMLTGSIG MLPSASLNSR NQGLYEPSHG SAPDIAGQGI ANPLATILSA
AMMLRFSLNQ EAAAQRIEAA VQNVLAQGLR TPDIWSEGTT KVGTAQMGDA VVKALAR
|
|---|
| |