| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1000 |
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| Symbol | |
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| ID | 4666435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | + |
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| Start bp | 1096037 |
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| End bp | 1098184 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639822200 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_969372 |
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| Protein GI | 120609694 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCGAA CGAAATGGTT TGGTTTTCGC TGCCGGGCGG CCTTGCTGGC TGCCGCAGCC
ACGTTGTGCA GTACCTGGGC CCATGCGCAG GCCGCGATCG AGTCGGTCAC GGGTGCAGTG
CAGGGCGGAA CGGAAATGGT CCGCATCGAG CTGTCGCAGC CGCTCGGCGC CGTGCCTTCG
GGCTTCGCGA TCCAGGCACC CGCCCGCATC GCGCTGGACT TCCCCAACAC CACCAACGGG
ACGGGCAAGT CGCTGGTCGA GGTGAACCAG GGCAACCTGA AGTCGGTGAA CATCGTCCAG
GCAGGCGACC GTTCACGGGT GGTCCTCAAT CTCAAGCAAC CCACGTCCTA CAAGGCGGAA
GTGCAGGGTT CCGCCCTCAT GGTGTCGCTG GAGCCCGTGT CCGGCGGGGC TGTGTCCAAT
GCGGCCGCCC CCGCGGTGTT CGCTGAAAAC CGCAATACCG ACGTGCTTCC GCTGCGCGAC
GTGGATTTCC GCCGCGGCAC CGACGGCGCC GGCCGGGTCA TCGTTGGCCT GGCCAACAAC
CAGGTGGGCG TGGACCTGCG CAAGCAGGGC AACAACCTCG TGGTGGAATT CCTCAAGTCC
TCGCTGCCCG AGGGGCTGCG CAGGCGCCTC GACGTCACGG ACTTCGGCAC GCCCGTGCGC
ACCGTGACCA CCACCACCCA GGGCGAGCGC GTGCGCATGA CGATCGAGCC CATCGGGGAG
TGGGAGCACA GCGCCTACCA GAGCGACAAC CAGTTCGTGG TCGAGGTGCG GCAGAAGAAG
GTCGATCTGA ACAAGCTGAG CCAGGGACCG GGCTTCAGCG GCGAGAAGCT GTCGCTCAAC
TTCCAGAACA TCGAGGTGCG CTCGCTGCTG CAGGTGATCG CGGACTTCAC CAATTTCAAC
ATCGTCACGT CCGACACGGT GACCGGCGCC CTCACGCTCC GGCTCAAGGA TGTGCCCTGG
GACCAGGCGC TGCAGATCAT CATGGATGCC AAGGGCCTGG GCATGCGCAA GTCCGGCACC
GTGCTGTGGA TCGCCCCGAA GGACGAGATC GACGCCCGTA CGAAGAAGGA CTATGAAGCG
GCGCTCGCCA TCCAGAAGCT CGAACCGCTG CGCACGCAGG CCTTCCAGCT CAACTACGCC
AAGGCGGCCG ACATGGTGAC CCAGCTGGCC AACAACAGCA CCGGCAGCAC CGGCACGTCC
ACCCGCTTCC TGTCCGAGCG TGGCAGCGCG ATCGCCGAGC CTCGCACCAA CCAGCTCTTC
GTCACCGACA CTCCTTCCAA GCTGGAAGAG GTGCGCCAGC TGCTCAGCAC GCTGGACGTG
GCCGTGCGCC AGGTGATGAT CGAGGCGCGC ATCGTCGAGG CGCGCGACAC CTTCGGCCGC
TCCCTGGGCG TGCGCCTGGG TGGCGCCGAC CTGCGGGCCA ACCGCGGGGG AGACGGCGGC
TACAGCGTGG GCGGCAACAA CCGCCTCGCG ATCGGCACCA GCTACAACAA CGCCGTCGCA
TCGAGCGGCG CGGGCGGAAC GGTGGCGACG GGGTCGGATG CCGCCGGCTC CACCTTCGTG
AACCTGCCGG CCGCGCTCTC TTCCGGCGCC AGCTTCGGCA ACTTCGCGCT GACGCTCTTC
AATTCCGCAG CGAACCGCTT CCTGACCCTG GAGCTGTCCG CCATGGAAGC CGACGGCCAG
GGCAAGGTGG TATCGAGCCC GCGCCTCATC ACGGCGGACC AGACCAAGGC CCTGATCGAG
CAGGGTACCG AATACCCGTA CTCGGTGACG GCCCCGAACG GCGCGACCAC CATCGCCTTC
AAGAAGGCGG TGCTGAAGCT GGAGGTCACG CCCCAGATCA CGCCCGAGGG CAACATCATC
CTCGACCTGG ATGTGAACAA GGACAGCAAG GGAGAGACGA CCACGCAGGG CGTCGCCATC
GACACGAACC ACGTCAAGAC GCAGGTTCTG GTGGAGAACG GCGGTACCGT GGTGATCGGC
GGGATCTTCC GGTTGGAGGA AACCAACCAG GAAAACAAGA TCCCCCTGCT GGGAGACGTG
CCGGTCGTCG GCAACCTCTT CAAAAACAGG ACCCGTGAGT CCACCAAGCG CGAAATGCTG
GTGTTCATCA CGCCGAAGGT GATTTCGGAC AAAGGTCCGG TCCGTTAA
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| Protein sequence | MIRTKWFGFR CRAALLAAAA TLCSTWAHAQ AAIESVTGAV QGGTEMVRIE LSQPLGAVPS
GFAIQAPARI ALDFPNTTNG TGKSLVEVNQ GNLKSVNIVQ AGDRSRVVLN LKQPTSYKAE
VQGSALMVSL EPVSGGAVSN AAAPAVFAEN RNTDVLPLRD VDFRRGTDGA GRVIVGLANN
QVGVDLRKQG NNLVVEFLKS SLPEGLRRRL DVTDFGTPVR TVTTTTQGER VRMTIEPIGE
WEHSAYQSDN QFVVEVRQKK VDLNKLSQGP GFSGEKLSLN FQNIEVRSLL QVIADFTNFN
IVTSDTVTGA LTLRLKDVPW DQALQIIMDA KGLGMRKSGT VLWIAPKDEI DARTKKDYEA
ALAIQKLEPL RTQAFQLNYA KAADMVTQLA NNSTGSTGTS TRFLSERGSA IAEPRTNQLF
VTDTPSKLEE VRQLLSTLDV AVRQVMIEAR IVEARDTFGR SLGVRLGGAD LRANRGGDGG
YSVGGNNRLA IGTSYNNAVA SSGAGGTVAT GSDAAGSTFV NLPAALSSGA SFGNFALTLF
NSAANRFLTL ELSAMEADGQ GKVVSSPRLI TADQTKALIE QGTEYPYSVT APNGATTIAF
KKAVLKLEVT PQITPEGNII LDLDVNKDSK GETTTQGVAI DTNHVKTQVL VENGGTVVIG
GIFRLEETNQ ENKIPLLGDV PVVGNLFKNR TRESTKREML VFITPKVISD KGPVR
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