Gene Aave_0894 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_0894 
Symbol 
ID4666865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp971368 
End bp972429 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content71% 
IMG OID639822094 
ProductnifR3 family TIM-barrel protein 
Protein accessionYP_969266 
Protein GI120609588 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00737] putative TIM-barrel protein, nifR3 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.421594 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGATCG GCCACATTCC CCTGGCGAAC CGCCTCTTCG TCGCTCCCAT GGCGGGGGTG 
ACGGACCGGC CGTTCCGCCA GCTCTGCAAG GCCCTGGGCG CGGGCTACGC CGTGAGCGAG
ATGGTGACCT CGCGCAAGGA CCTGTGGAAC AGCCTGAAGA CCTCGCGCCG TGCCAACCAC
GAGGGCGAGC CCGGCCCGAT CGCCGTGCAG ATCGCCGGCA CCGACGCGGC CATGATGTCC
GAGGCCGCGC TCTACAACAT CGACCGCGGC GCGGAGATCA TCGACATCAA CATGGGCTGC
CCCGCCAAGA AGGTCTGCAA CAAGTGGGCG GGCTCGGCCC TCATGCAGAA CGAGGCGCTG
GCCGTGGAGA TCGCGCAGGC CGTCGTCGAT GCCTGCGCAC CGCGCAACGT GCCCGTCACG
CTCAAGATGC GCACCGGCTG GTGCCAGCAG CACCGGAATG CGGTGCAGCT CGCGCGCGCG
TTCGAGGGCG TGGGCATCCA GATGCTGACG GTGCACGGCC GCACGCGCGA GCAGGGATAC
AAGGGCCACG CCGAGTACGA CACCATCGCC GCCGTGAAGG CCGCCGTGCG CGTGCCGGTG
GTGGCCAACG GCGACATCGA TTCGCCCGAG AAGGCGAAGG CGGTGCTTGC CGCAACGGGA
GCGGACGCGA TCATGATCGG CCGCGCGGCG CAGGGCCGGC CCTGGATCTT CCGCGAGATC
GGCCACTACC TCGCCACGGG CGAGCACCTG GCGCCGCCGC TGGTGGCCGA GGTGCGGCGC
CTGCTGCTGG ACCACCTGCA GGACCACTAC GCGCTCTACG GCGAGGCCAC GGGCGTGCGC
AGCGCACGCA AGCACATCGC CTGGTACGTG CGCGCGCTGC CGGGCGGCGA GGCGTTCCGG
CAGCACATCA ACACCATCGA CGACTGCGCC GCCCAGTGGC AGGCCGTCGC GCTGTTCTTC
GAGGAGCTGG GCCGGCACAT GGACCGCCTC CCCGCAGCGC CGCCCGAGGG GGCCGGCACG
GATACCGACG ATACGCAGGA ACCACAAGGA CTGCCCGCAT GA
 
Protein sequence
MQIGHIPLAN RLFVAPMAGV TDRPFRQLCK ALGAGYAVSE MVTSRKDLWN SLKTSRRANH 
EGEPGPIAVQ IAGTDAAMMS EAALYNIDRG AEIIDINMGC PAKKVCNKWA GSALMQNEAL
AVEIAQAVVD ACAPRNVPVT LKMRTGWCQQ HRNAVQLARA FEGVGIQMLT VHGRTREQGY
KGHAEYDTIA AVKAAVRVPV VANGDIDSPE KAKAVLAATG ADAIMIGRAA QGRPWIFREI
GHYLATGEHL APPLVAEVRR LLLDHLQDHY ALYGEATGVR SARKHIAWYV RALPGGEAFR
QHINTIDDCA AQWQAVALFF EELGRHMDRL PAAPPEGAGT DTDDTQEPQG LPA