| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0690 |
|---|
| Symbol | |
|---|
| ID | 4666785 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 749121 |
|---|
| End bp | 749732 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639821892 |
|---|
| Product | putative conjugal transfer TRAF transmembrane protein |
|---|
| Protein accession | YP_969065 |
|---|
| Protein GI | 120609387 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
|---|
| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC CGACCACCAC GGCCAGCACG CCCGCCGTTG CGCCCCGTCC TCGCTCGCAC
CCGCGTTCAC GTTTGCGCGC TCGCATCGTC GTGGCGACAC TGGCTGCCAT CGGCTTCGCT
GCGCTGGCCT GGGCGGCTTT CGTGTCGCTG CTGCCGCGTC TGACCTACAA CCCGTCTGAC
AGCGTGGTGG TCGGCTGGTA TCGCATCGAC CCGTTCGACC CGCGCACCGC CTCGCTGCCA
CGTCCCTTGT CCGTGGACAG CATCGTGCTG GTGCCGTTGC CAGCCACGGC CGCTGCGCTC
GCTGCGCAGC GCGGCTACCT GCCGACGCGC GTTCCGCTGC TCAAACGTGT GGGCGCGGTC
GCGCCGCAAC ACGTCTGCAT CGTCGCCGGT CAGGTACGCA TCGATGGCGT GCCTTCGGCC
GCCGTGCTGC CCGCCGACCG GCTGGGCCGG CCGCTGCCGT CCCTGCAGCT TTGCCGCCGT
CTCGAACCGG GCGAGCTGTT CCTGTTGAGC GTGACCAATC CGGCATCGTT CGACAGCCGC
TACTTCGGTC CGGTCAGCGC ATCCGCCGTG ATCGGCATGG CGCGCCCGAT CTGGCTGGAG
ACACACCCAT GA
|
|---|
| Protein sequence | MTAPTTTAST PAVAPRPRSH PRSRLRARIV VATLAAIGFA ALAWAAFVSL LPRLTYNPSD
SVVVGWYRID PFDPRTASLP RPLSVDSIVL VPLPATAAAL AAQRGYLPTR VPLLKRVGAV
APQHVCIVAG QVRIDGVPSA AVLPADRLGR PLPSLQLCRR LEPGELFLLS VTNPASFDSR
YFGPVSASAV IGMARPIWLE THP
|
|---|
| |