Gene Aave_0626 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_0626 
Symbol 
ID4667694 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp676973 
End bp677965 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content64% 
IMG OID639821830 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_969004 
Protein GI120609326 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACCA ATTTGCTGAA ACCCAAGACG ATCAACGTCG AGCAGCTCGG ACACAACCGC 
GCCAAGGTCG CGCTGGAGCC CTTCGAGCGC GGATACGGGC ACACGCTCGG CAACGCCATC
CGGCGCGTGC TGCTGTCGTC CATGGTGGGT TACGCAGCAA CGGAAGTGAC GATCGCCGGC
GTGCTCCACG AGTACTCGTC CATCGACGGC GTTCAGGAAG ATGTCGTGAA CATCCTGCTG
AACCTGAAGG GCGTCGTGTT CAAGCTCCAC AACCGCGACG AGGTCACGCT GAGCCTGCGC
AAGGATGGCG AGGGCGTGGT CACCGCCCGC GACATCCAGA CGCCGCACGA CGTGGAAATC
GTCAATCCCG ACCACGTGAT CGCCCACCTG TCGCAAGGCG GCAAGCTGGA CATGCAGATC
AAGGTGGAGA AGGGCCGCGG CTACGTGCCG GGCAACCTGC GCCGCTATGC CGACGAATCG
ACCAAGTCGA TCGGCCGCAT CGTGCTGGAC GCCTCCTTCT CGCCGGTCAA GCGTGTGAGC
TACACGGTCG AGAGCGCCCG CGTCGAGCAG CGCACCGACC TGGACAAGCT GGTCGTCGAG
ATCGAGACCA ATGGTGCGAT CACCGCGGAA GATGCCGTGC GCGCCTCCGC CAAGATCCTG
GTCGAGCAGC TCGCTGTCTT CGCACAGCTC GAGGGCGGTG AACTGGCCGC GTTCGACACG
CCGGCCGGCC CGCGTGGCAG CGCCACGTTC GATCCGATCC TGCTGCGTCC CGTGGACGAG
CTGGAACTCA CCGTGCGCTC GGCCAATTGC CTGAAGGCCG AGAACATCTA CTACATCGGC
GACCTGATCC AGCGTACCGA GAACGAGCTG CTCAAGACCC CGAACCTGGG TCGCAAGTCG
CTCAACGAGA TCAAGGAAGT GCTGGCTTCG CGCGGCCTCA CGCTGGGCAT GAAGCTCGAG
AACTGGCCGC CGGCCGGCCT CGACAAGCGC TGA
 
Protein sequence
MQTNLLKPKT INVEQLGHNR AKVALEPFER GYGHTLGNAI RRVLLSSMVG YAATEVTIAG 
VLHEYSSIDG VQEDVVNILL NLKGVVFKLH NRDEVTLSLR KDGEGVVTAR DIQTPHDVEI
VNPDHVIAHL SQGGKLDMQI KVEKGRGYVP GNLRRYADES TKSIGRIVLD ASFSPVKRVS
YTVESARVEQ RTDLDKLVVE IETNGAITAE DAVRASAKIL VEQLAVFAQL EGGELAAFDT
PAGPRGSATF DPILLRPVDE LELTVRSANC LKAENIYYIG DLIQRTENEL LKTPNLGRKS
LNEIKEVLAS RGLTLGMKLE NWPPAGLDKR