| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0609 |
|---|
| Symbol | |
|---|
| ID | 4668681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 665967 |
|---|
| End bp | 667700 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639821813 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_968987 |
|---|
| Protein GI | 120609309 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.348028 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGC GTTTGACCGC CCTGGCGTTC GCCGCCACGG CCCTGGTGAT CGGGCAGGCC
GCATGGGCGG GCGAGGCGGA GGCCAAGAAG TGGGTGGACA GCGAATTCCA GCCGTCCACG
CTCAGCAAGG ACCAGCAGAT GGCCGAGATG AAGTGGTTCA TCGAAGCCGC CAAGAAGCTG
CAGGCCAAGG GCGTGAAGGA AATCTCGGTC GTCTCCGAAA CCATCACCAC GCACGAATAC
GAATCCAAGA CCCTCGCCAA GGCGTTCTCG GAAATCACCG GCATCACCGT CAAGCACGAC
CTCATCCAGG AAGGCGACGT GGTCGAGAAG CTGCAGACCT CGATGCAGTC GGGCAAGTCC
ATCTACGACG GCTGGATCTC GGATTCCGAC CTGATCGGCA CGCACTACCG CTACGGCAAG
ATGATGAGCC TGACCGACTA CATGGCGGGC GACGGCAAGG AATGGACCAA CCCCGGGCTG
GACCTGAAGG ACTTCATCGG CATCAAGTTC ACCACCGCGC CGGACGGCAA GCTCTACCAG
CTGCCGGACC AGCAGTTCGC CAACCTCTAC TGGTTCCGCG CCGACCTCTT CGCCCGCCAG
GACCTGAAGG ACAAGTTCAA GGCCAAGTAC GGCTACGAGC TGGGCGTGCC GCAGAACTGG
AGCGCCTACG AGGACATCGC CGAGTTCTTC AGCAACGACG TCAAGCAGAT CGACGGCAAG
CCCATCTACG GCCACATGGA CTACGGCAAG AAGGACCCGT CGCTGGGCTG GCGCTTCACC
GATGCCTGGC TCTCCATGGC CGGTGCGGCC GACGTCGGCA CGCCCAACGG CCTGCCGATC
GACGAATGGG GCATCCGGGT GGCGGACGAC AAGTGCACCC CCGTGGGCGC ATCGGTGTCG
CGCGGCGGCG CCACCAACTC GCCGGCAGCG GTCTATGCGC TCACCAAGTA CGTGGACTGG
ATGAAGAAGT ACGCGCCCAA GGAAGCCCTG GGCATGACCT TCACCGAAGC CGGCCCCGTG
CCGGCCCAGG GCCAGATCGC CCAGCAGATC TTCTGGTACA CCGCGTTCAC CGCCGACATG
GTCAAGCCCG GCCTGCCCGT CGTGAACGCC GACGGCACGC CCAAGTGGCG CATGGCCCCC
GGCCCCAACG GCCCCTACTG GAAGCAGGGC ATGCAGAACG GCTACCAGGA CGTGGGTTCG
TGGTCGTTCT TCAAGGGCCA CGACGCCAAC AGGACGGCGG CGGCCTGGCT CTATGCCCAG
TTCGTGACCG CCAAGACCAC GTCGCTGAAG AAGACGCTGG TGGGCCTGAC GCCGATCCGC
GAAAGCGACA TCCAGTCCAA GGCCATGACC GATGCGGCGC CCAAGCTGGG TGGCCTGGTC
GAGTTCTACC GCAGCCCTGC GCGCGTGGCC TGGTCGCCCA CCGGCACCAA CGTGCCCGAC
TACCCCAAGC TGGCACAGCT CTGGTGGAAG AACGTGGCAC AGGCCGTCAC GGGCGAGAAG
ACGCCGCAGG GCGCCATGGA CAACCTCGCC GAGGAAATGG ACCAGGTGAT GGCCCGCCTG
CAGCGCGCCG GCATGGCCCA CTGCGCGCCC AAGCTCAACC CCAAGGGCGA TCCCGCCAAG
TGGCTGAGCG ACCAGCACGC CCCCTGGAAG AAGCTGGCCA ACGAGAAGCC CAAGGGTGAA
ACCATCGCCT ACGACAAGCT GCTGCAGGCC TGGAAGGACG GCAAGACCCG CTGA
|
|---|
| Protein sequence | MKMRLTALAF AATALVIGQA AWAGEAEAKK WVDSEFQPST LSKDQQMAEM KWFIEAAKKL
QAKGVKEISV VSETITTHEY ESKTLAKAFS EITGITVKHD LIQEGDVVEK LQTSMQSGKS
IYDGWISDSD LIGTHYRYGK MMSLTDYMAG DGKEWTNPGL DLKDFIGIKF TTAPDGKLYQ
LPDQQFANLY WFRADLFARQ DLKDKFKAKY GYELGVPQNW SAYEDIAEFF SNDVKQIDGK
PIYGHMDYGK KDPSLGWRFT DAWLSMAGAA DVGTPNGLPI DEWGIRVADD KCTPVGASVS
RGGATNSPAA VYALTKYVDW MKKYAPKEAL GMTFTEAGPV PAQGQIAQQI FWYTAFTADM
VKPGLPVVNA DGTPKWRMAP GPNGPYWKQG MQNGYQDVGS WSFFKGHDAN RTAAAWLYAQ
FVTAKTTSLK KTLVGLTPIR ESDIQSKAMT DAAPKLGGLV EFYRSPARVA WSPTGTNVPD
YPKLAQLWWK NVAQAVTGEK TPQGAMDNLA EEMDQVMARL QRAGMAHCAP KLNPKGDPAK
WLSDQHAPWK KLANEKPKGE TIAYDKLLQA WKDGKTR
|
|---|
| |