| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0525 |
|---|
| Symbol | |
|---|
| ID | 4666210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 568116 |
|---|
| End bp | 569777 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639821730 |
|---|
| Product | SEFIR domain-containing protein |
|---|
| Protein accession | YP_968904 |
|---|
| Protein GI | 120609226 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0577741 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGCGG CCATGGTATA CATCGCAACT CGATCAGCCC GCAATTCCTT TATCGTCAGC
ACTGAGTCAG AATCCGGCGG CACTTGCCAC AGTGAGCACG AAAGTGCGAC ACAATTCTTG
ATATTGAGCA GATGCAAGGC GCTCGGCAGA AGGTCGCGAC ACTACTCAAA CGACAGCCAC
ATATCATCAA CAACAGTTTC GGGAGGCGCA GTGAGCGATC AGGAAAAACC AAAAGTATTC
ATATCTTACA GCTGGACCAA TCAGGATCAC ATTCAGTGGG TTGTGGACTT GGCGCATGAG
CTGGGTGATG CGGGCGTCCA CGTGTTGCTC GATAAGTTCG ATCTCCGCGA GGGCGATGAT
TCCATCCAGT TCATGGAGAG GATTGTTAAC GATCCAACGG TTCAGAAGGT ACTTCTGATT
TGCGACCGAG TTTATGCAGA AAAGACGAAT GCAAGGACTG GCGGCGCGGG GGTGGAAGCT
CAGATTATCT CGCCGAGAAT CTATGCGAAC ACGGATAAGG GAAAATTCGT AGCTGTGCTA
TCAGAGAGAG ATGCTGAAGG CAACCCCTAC CTGCCAACGT ACTACGCCAG CCGGATATAC
ATAGACCTGA GTAATCAAGA CAAGTACAAC GAGAATTTTG AGTCGCTAAT TCGATGGATC
AACAATAAGC CGCTGTACCA GCGCCGAGCA ATCGGTCAAC GTCCGGCGTA TCTGGACGAA
CCGGAGGAGC TCTCTCTCGG GACTGCTCCA GCATTCCGAC GCGCGATTGA GGCGATGAAA
AGTGGAAAGC CTTCAGCAGG GGGCGCACTA AGTGATTACT TCCAAACGGT ATCCACAAAT
CTCGAACGGC TTCGTCTCCA TGACTCAGAA TCTGAAGACT GGGCAGATGT TTTCTTCACG
AATCTAAGTT CGACAATACC CCTTCGTAAC GAGCTAAATC ATACATTTGA AGCCATAGCC
ACCTATGGCG TCACAAGTGA ATTTGGCCCC AAAACTATCC GATTTTTTGA GTCGCTTATA
CCGTACTTCG ATAGACCGGA AGGGGTCAGA TCATGGAATG ACTCCGATTT CGACAACTTC
CGGTTTCTCG GCTATGAATT TTTCATCCAC GCGCTTGCTA TCTTCATCAG CCACGAGCGG
TTTGACCTGT GCAGTCTACT TTTGAATAGC GCATATTACA ACGAGCGAAA TAGAGAATTG
GGCAAGGAAC CAATCTCCAA CTTCACCGTA TTCAACAATT CAGTGCAGAC CCTCTCAAGG
CACAACGAAG CGCAGCCTAA GCAGTACACC TCTCCTATCG GCAAGCTTGT AAGCGAGCGG
TTAGTTGGCA CTCAGGTTAA TCTAAGAAAG ATCGTCCAAG CTGATCTTAT TGCATACATC
AGAAGCGATC TAGATTCACT TAACTCAAGG AACTGGGACA TGTGGTGGCC GCATATGTAC
GTTTATGGCG GTCGGCATTA TGGAGCACTA GAATTATTTG CACGCGCCCA ATCGATTGGA
TATTTTGAAA AGATAAAAGG ACTTTTGGGA GTAAGCAATG CAGATGGCCT CGCACCGTTG
ATCGAGGCCC ACTCCGGAGG GCAACGCGCT CCCCGCTTCA ACTATGAGCG GGTGAATGTA
GGCAGTCTGA TCGGCATTGA AAAGCTTGCT TCCAGGCCAT AG
|
|---|
| Protein sequence | MSAAMVYIAT RSARNSFIVS TESESGGTCH SEHESATQFL ILSRCKALGR RSRHYSNDSH
ISSTTVSGGA VSDQEKPKVF ISYSWTNQDH IQWVVDLAHE LGDAGVHVLL DKFDLREGDD
SIQFMERIVN DPTVQKVLLI CDRVYAEKTN ARTGGAGVEA QIISPRIYAN TDKGKFVAVL
SERDAEGNPY LPTYYASRIY IDLSNQDKYN ENFESLIRWI NNKPLYQRRA IGQRPAYLDE
PEELSLGTAP AFRRAIEAMK SGKPSAGGAL SDYFQTVSTN LERLRLHDSE SEDWADVFFT
NLSSTIPLRN ELNHTFEAIA TYGVTSEFGP KTIRFFESLI PYFDRPEGVR SWNDSDFDNF
RFLGYEFFIH ALAIFISHER FDLCSLLLNS AYYNERNREL GKEPISNFTV FNNSVQTLSR
HNEAQPKQYT SPIGKLVSER LVGTQVNLRK IVQADLIAYI RSDLDSLNSR NWDMWWPHMY
VYGGRHYGAL ELFARAQSIG YFEKIKGLLG VSNADGLAPL IEAHSGGQRA PRFNYERVNV
GSLIGIEKLA SRP
|
|---|
| |