| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0345 |
|---|
| Symbol | rplP |
|---|
| ID | 4667281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 374441 |
|---|
| End bp | 374857 |
|---|
| Gene Length | 417 bp |
|---|
| Protein Length | 138 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639821551 |
|---|
| Product | 50S ribosomal protein L16 |
|---|
| Protein accession | YP_968726 |
|---|
| Protein GI | 120609048 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0197] Ribosomal protein L16/L10E |
|---|
| TIGRFAM ID | [TIGR01164] ribosomal protein L16, bacterial/organelle |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.739822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000284726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAAC CCGCTCGTCG CAAATACCGC AAAGAGCAGA AGGGCCGTAA CACCGGCGTC
GCCACCCGGG GCAACTCGGT GGCGTTCGGT GACTTCGGCC TGAAGTGCAC GGACCGTGGC
CGCCTGACGG CCCGCCAGAT CGAAGCCGCA CGCCGTGCGA TCTCCCGTCA CGTGAAGCGT
GGCGGCCGCA TCTGGATCCG TGTGTTCCCC GACAAGCCGA TTTCCACCAA GCCCGCAGAA
GTGCGGATGG GTAACGGCAA GGGCAACCCC GAGTACTACG TGGCCGAGAT CCAGCCCGGC
AAGATCGTCT TCGAAATCGT GGGCGTTCCT GAAGAGCTGG CGCGCGAAGC GTTCCGCCTG
GCTGCCGCCA AGCTGCCGCT GCGCACCACG TTCGTGAGCC GCCAGATCGG CGCCTGA
|
|---|
| Protein sequence | MLQPARRKYR KEQKGRNTGV ATRGNSVAFG DFGLKCTDRG RLTARQIEAA RRAISRHVKR
GGRIWIRVFP DKPISTKPAE VRMGNGKGNP EYYVAEIQPG KIVFEIVGVP EELAREAFRL
AAAKLPLRTT FVSRQIGA
|
|---|
| |