| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0322 |
|---|
| Symbol | |
|---|
| ID | 4669665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 354091 |
|---|
| End bp | 355659 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639821528 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_968703 |
|---|
| Protein GI | 120609025 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.516199 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTCTC CCACCCACAC ACCGCCCCTG GCGCCGCCGC CGCTCGAAGG CAGCGCGCGC
ATGTGGGGCA CGCTGGCCCT CTCGGCGGCC ACATTCATGA ACGTGCTGGA CACGTCGATC
GCCAACGTGT CGCTGCCCGC CATCGCGGGC GACCTGGGCG TGAGCCCCAC GCAGGGCACC
TGGGTCATCA CCAGCTTCGC GGTGGCCAAC GCCATCGCGG TGCCGCTCAC CGGCTGGCTG
TCGCAGCGCT TCGGGCAGGT GCGCCTGTTC GTGGCCAGCG TGACGCTCTT CGTCATCGCA
TCGCTGCTGT GCGGGCTGGC GCCCAACATG GCCACGCTCA TCGCCTTCCG CGCACTGCAG
GGTTTCGTGG CCGGGCCGAT GATCCCGCTG TCGCAGTCGC TGCTGCTTTC CAGCTACCCC
AAGGCGCTGG CCGGGCTGGC CATGGCGATG TGGTCGATGA CCACGCTCAT CGCGCCGGTC
ATGGGGCCGT TGCTGGGCGG CTGGATCACG GACAACATGA CCTGGCCGTG GATCTTCTAC
ATCAACGTGC CGGTGGGCAT CGTGGCGGTG CTCGTCACCT GGGGCATATT CCACAAGCGC
GAATCCGAGC GGCGCGCGCT GCCGATCGAC TCCGTCGGCC TGGCCCTGCT CGTCATCTGG
GTGGCGGCGA TGCAGGTGAT GCTGGACATC GGCAAGGAGC ATGACTGGTT CGCTTCGCCC
TGGGTCGTGG CCTGCTGTGT GGTGGCCGTG GTGGGCTTCA TCACCTTCAT GGTCTGGGAG
CGCGGCGAGG AGCACCCCGT GGTGGACCTG TCGCTCTTCA AGATCCGGAA TTTCTGGGCG
GGCGCGCTGG CCACCTCGGT GGGCTACGGG CTGTTCTTCG GCAACGTGGT GCTGCTGCCG
CTCTGGCTGC AGCAGTACAT GGGCTACACG GCCACGCAGG CGGGCATGGT GATGGCGCCG
GTGGGCCTGC TGGCGCTGGT GCTCTCCCCG GTGGTGGGCA AGAACATCGC CAAGGTGGAC
CCGCGCCGTT TCGCGACCTT CGCCTTCCTC GTGTTCGCGC TGGTGCTGTG GATGCGCTCG
CGGTTCAATA CGCAGGCGGA CCTGGCGACC ATCATGGTGC CCACCATCAT CCAGGGCATC
GCCATGGCGT TCTTCTTCAT CCCGCTGGTG ACGCTCACGC TGTCGGAGAT CGCGCCGGCG
CGCATTCCGT CGGCGTCCGG GCTGTCGAAC TTCATGCGCA TCACGGCCGG GGCCATCGGC
ACGTCCGTGT CCACCACGCT GTGGGAGCGG CGTGCCACGC TGCACCATGC GCAGTTGACC
GAGGGCCTGC AGCAGGGCGG GGTGGCCGTC ACGCAGACGC TGCAAGGGCT GCAGGCGGGC
GGATTGACGG CGGAGCAGGC GCTCGCGCAG GTCGAGCGGC TGGTGAACCA GCAGGCCTTC
ATGCTGGCGG CCAACGACAT CTTTTATGCG TCGGCCGTGC TGTTCCTGCT GCTGATTCCG
CTGGTCTGGC TGGCCCACCC GGTACGTGCC AGTGCCGGCA GCGCGGACGC GGCGGCGGGT
GCGCATTGA
|
|---|
| Protein sequence | MSSPTHTPPL APPPLEGSAR MWGTLALSAA TFMNVLDTSI ANVSLPAIAG DLGVSPTQGT
WVITSFAVAN AIAVPLTGWL SQRFGQVRLF VASVTLFVIA SLLCGLAPNM ATLIAFRALQ
GFVAGPMIPL SQSLLLSSYP KALAGLAMAM WSMTTLIAPV MGPLLGGWIT DNMTWPWIFY
INVPVGIVAV LVTWGIFHKR ESERRALPID SVGLALLVIW VAAMQVMLDI GKEHDWFASP
WVVACCVVAV VGFITFMVWE RGEEHPVVDL SLFKIRNFWA GALATSVGYG LFFGNVVLLP
LWLQQYMGYT ATQAGMVMAP VGLLALVLSP VVGKNIAKVD PRRFATFAFL VFALVLWMRS
RFNTQADLAT IMVPTIIQGI AMAFFFIPLV TLTLSEIAPA RIPSASGLSN FMRITAGAIG
TSVSTTLWER RATLHHAQLT EGLQQGGVAV TQTLQGLQAG GLTAEQALAQ VERLVNQQAF
MLAANDIFYA SAVLFLLLIP LVWLAHPVRA SAGSADAAAG AH
|
|---|
| |