Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dvul_2920 |
Symbol | |
ID | 4665034 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris DP4 |
Kingdom | Bacteria |
Replicon accession | NC_008751 |
Strand | + |
Start bp | 3417197 |
End bp | 3418960 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639821181 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_968358 |
Protein GI | 120603958 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.654046 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCGAA CCCGCCGCCG CTACAGAATA TCCCCGGCCC GCAGGCTTCT TCTGATGATG CTGGCCCTTG TTGCCCTCTC CATCTCCGTA TCGGGCTGTG CCACGCGCAA GCCCCTTTCT TCGCTTCCCG CCGACAAGGA GACGGCCTGC CCCGCGCCGG AGAAATCCTC CGGCAGCAGT GACGAGGTGG TCGAACTCGC CATCCCCCCC GTGGATGACG GCCTGCCCCT CTCGCCCGCA GAACAGGCCG CGCTGGCATC CACCGGCGAG GTCGACCGCA ACCTCTCCCC TGAAGACTAC CGCGCCGTCG TCCTGCATTT CAAATACTAC ACCCACAGGG CGCGCGGCAC CATGGAGCGT CTGGCCCGCC GTTCGCAGAA CTATCTGCCC TACGTCCGCG AAGTGCTTCG CAAACGCGGC CTGCCCGAAG AACTGGCCTA TCTCGCCATC GTCGAGAGCG GGTACAACCC CAATGCCGTC TCGTCGTCCG GTGCCGTGGG CATCTGGCAG TTCATGCCCT ACACCGGCAA ACTCTACGGC CTCGACTACG ACTGGTGGAT AGACGAACGC CGCGACCCCT ACAAGGCCAC CCATTCCGCC GCGTCGTACC TTGCCAAGCT CTATGGCGAC TTCAACGACT GGCACCTCGC CCTCGCCGCC TACAATGCCG GTGAGGGCAA GATAGGTCGC GCGCTTGCCG GGACGGGGGC CAAGGGCTTC TTCGAACTGG TGCGCCGGAA CGAGAGCCTC GACGAGAAGG CCCGTCTCAA GGACGAGACC AAGCAGTACG TGCCCCGGTT CATCGCCATC ACCAAGATCA TGCGCAACCT CCAGTCGCTC GGTTTCGCCC CGCTCGACAC CTCGTGCGCC ATCCGGCCCG TCGAGGTGCG TGTCCGCCCC GGTACGGACC TCATGGCCCT TGCGCAGGCT TCCGGCATGA GCTGGGCGTC CTTCTCCGAC CTGAACCCGG CTTTCCGGCG CTATGTCAGC CCGCCTGACG CCCACTCCGT CATATATCTT CCGGAGGCAC GCCGCGAAGC GGCCCTCGCC TACCTCGCCA AACCGCAGAC CCGCAACTAT GCAGGCTGGC AGCCCTACAC CGTGCGCAAG GGCGACACGC TGGAGCGCGT CGGCAAGCGC GCCGGGGTTC CCGTATCGGT GCTGAAGCAG GTCAACAAGG TGCGCAGCAA CAACCTCAAG GTCGGCAGCA CACTGCTCAT CCCCGGCGGT ACGCATCACG AACCCGACAC CGGGCCCGCG ATCAAGCGCG CCCTTGCCGA ACGCCGCGGC AGCTACATCG TGAAACAGGG CGATACCCTC TACAGCATCG CACGCACACA GGGCGTCGAA CTGAACACCC TGATGCAGGC CAATGGCATG GCAGAGGCGC ACACCCTGCG CGTGGGGCAG AAGCTCTACA TCCCCGGCGG GTCCGAAGCG CCTGCGCCGC AGCCTGTCGC GACAAGCAAG CCGGAGAAGC CGCAGGCCCC TGTGGCACGC GCCACATCCA CCCCGGAACC TCGCCAGCTG GTCGCCAGCG TGACCGCCAT GCCCGTATCT GCCGCCAAGG CCCCCTCGCG CAGCGCAGGG CCCTCCGCCG CCGTCAAGAC GAAGACCGTC ACCTACAAGG TGCAGCAGGG TGACACCATG TGGGCCATCG CCCGCAAGTT CAATGTCCAC CCCAAAGAAC TGATGCGCCA GAACAGGCTC GAAATGGATA CGGTGTTGCG GCCCGGCGAC TCCATCACCG TGACGCAGGA ATAG
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Protein sequence | MQRTRRRYRI SPARRLLLMM LALVALSISV SGCATRKPLS SLPADKETAC PAPEKSSGSS DEVVELAIPP VDDGLPLSPA EQAALASTGE VDRNLSPEDY RAVVLHFKYY THRARGTMER LARRSQNYLP YVREVLRKRG LPEELAYLAI VESGYNPNAV SSSGAVGIWQ FMPYTGKLYG LDYDWWIDER RDPYKATHSA ASYLAKLYGD FNDWHLALAA YNAGEGKIGR ALAGTGAKGF FELVRRNESL DEKARLKDET KQYVPRFIAI TKIMRNLQSL GFAPLDTSCA IRPVEVRVRP GTDLMALAQA SGMSWASFSD LNPAFRRYVS PPDAHSVIYL PEARREAALA YLAKPQTRNY AGWQPYTVRK GDTLERVGKR AGVPVSVLKQ VNKVRSNNLK VGSTLLIPGG THHEPDTGPA IKRALAERRG SYIVKQGDTL YSIARTQGVE LNTLMQANGM AEAHTLRVGQ KLYIPGGSEA PAPQPVATSK PEKPQAPVAR ATSTPEPRQL VASVTAMPVS AAKAPSRSAG PSAAVKTKTV TYKVQQGDTM WAIARKFNVH PKELMRQNRL EMDTVLRPGD SITVTQE
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