Gene Dvul_2920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_2920 
Symbol 
ID4665034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand
Start bp3417197 
End bp3418960 
Gene Length1764 bp 
Protein Length587 aa 
Translation table11 
GC content66% 
IMG OID639821181 
Productlytic transglycosylase, catalytic 
Protein accessionYP_968358 
Protein GI120603958 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.654046 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCGAA CCCGCCGCCG CTACAGAATA TCCCCGGCCC GCAGGCTTCT TCTGATGATG 
CTGGCCCTTG TTGCCCTCTC CATCTCCGTA TCGGGCTGTG CCACGCGCAA GCCCCTTTCT
TCGCTTCCCG CCGACAAGGA GACGGCCTGC CCCGCGCCGG AGAAATCCTC CGGCAGCAGT
GACGAGGTGG TCGAACTCGC CATCCCCCCC GTGGATGACG GCCTGCCCCT CTCGCCCGCA
GAACAGGCCG CGCTGGCATC CACCGGCGAG GTCGACCGCA ACCTCTCCCC TGAAGACTAC
CGCGCCGTCG TCCTGCATTT CAAATACTAC ACCCACAGGG CGCGCGGCAC CATGGAGCGT
CTGGCCCGCC GTTCGCAGAA CTATCTGCCC TACGTCCGCG AAGTGCTTCG CAAACGCGGC
CTGCCCGAAG AACTGGCCTA TCTCGCCATC GTCGAGAGCG GGTACAACCC CAATGCCGTC
TCGTCGTCCG GTGCCGTGGG CATCTGGCAG TTCATGCCCT ACACCGGCAA ACTCTACGGC
CTCGACTACG ACTGGTGGAT AGACGAACGC CGCGACCCCT ACAAGGCCAC CCATTCCGCC
GCGTCGTACC TTGCCAAGCT CTATGGCGAC TTCAACGACT GGCACCTCGC CCTCGCCGCC
TACAATGCCG GTGAGGGCAA GATAGGTCGC GCGCTTGCCG GGACGGGGGC CAAGGGCTTC
TTCGAACTGG TGCGCCGGAA CGAGAGCCTC GACGAGAAGG CCCGTCTCAA GGACGAGACC
AAGCAGTACG TGCCCCGGTT CATCGCCATC ACCAAGATCA TGCGCAACCT CCAGTCGCTC
GGTTTCGCCC CGCTCGACAC CTCGTGCGCC ATCCGGCCCG TCGAGGTGCG TGTCCGCCCC
GGTACGGACC TCATGGCCCT TGCGCAGGCT TCCGGCATGA GCTGGGCGTC CTTCTCCGAC
CTGAACCCGG CTTTCCGGCG CTATGTCAGC CCGCCTGACG CCCACTCCGT CATATATCTT
CCGGAGGCAC GCCGCGAAGC GGCCCTCGCC TACCTCGCCA AACCGCAGAC CCGCAACTAT
GCAGGCTGGC AGCCCTACAC CGTGCGCAAG GGCGACACGC TGGAGCGCGT CGGCAAGCGC
GCCGGGGTTC CCGTATCGGT GCTGAAGCAG GTCAACAAGG TGCGCAGCAA CAACCTCAAG
GTCGGCAGCA CACTGCTCAT CCCCGGCGGT ACGCATCACG AACCCGACAC CGGGCCCGCG
ATCAAGCGCG CCCTTGCCGA ACGCCGCGGC AGCTACATCG TGAAACAGGG CGATACCCTC
TACAGCATCG CACGCACACA GGGCGTCGAA CTGAACACCC TGATGCAGGC CAATGGCATG
GCAGAGGCGC ACACCCTGCG CGTGGGGCAG AAGCTCTACA TCCCCGGCGG GTCCGAAGCG
CCTGCGCCGC AGCCTGTCGC GACAAGCAAG CCGGAGAAGC CGCAGGCCCC TGTGGCACGC
GCCACATCCA CCCCGGAACC TCGCCAGCTG GTCGCCAGCG TGACCGCCAT GCCCGTATCT
GCCGCCAAGG CCCCCTCGCG CAGCGCAGGG CCCTCCGCCG CCGTCAAGAC GAAGACCGTC
ACCTACAAGG TGCAGCAGGG TGACACCATG TGGGCCATCG CCCGCAAGTT CAATGTCCAC
CCCAAAGAAC TGATGCGCCA GAACAGGCTC GAAATGGATA CGGTGTTGCG GCCCGGCGAC
TCCATCACCG TGACGCAGGA ATAG
 
Protein sequence
MQRTRRRYRI SPARRLLLMM LALVALSISV SGCATRKPLS SLPADKETAC PAPEKSSGSS 
DEVVELAIPP VDDGLPLSPA EQAALASTGE VDRNLSPEDY RAVVLHFKYY THRARGTMER
LARRSQNYLP YVREVLRKRG LPEELAYLAI VESGYNPNAV SSSGAVGIWQ FMPYTGKLYG
LDYDWWIDER RDPYKATHSA ASYLAKLYGD FNDWHLALAA YNAGEGKIGR ALAGTGAKGF
FELVRRNESL DEKARLKDET KQYVPRFIAI TKIMRNLQSL GFAPLDTSCA IRPVEVRVRP
GTDLMALAQA SGMSWASFSD LNPAFRRYVS PPDAHSVIYL PEARREAALA YLAKPQTRNY
AGWQPYTVRK GDTLERVGKR AGVPVSVLKQ VNKVRSNNLK VGSTLLIPGG THHEPDTGPA
IKRALAERRG SYIVKQGDTL YSIARTQGVE LNTLMQANGM AEAHTLRVGQ KLYIPGGSEA
PAPQPVATSK PEKPQAPVAR ATSTPEPRQL VASVTAMPVS AAKAPSRSAG PSAAVKTKTV
TYKVQQGDTM WAIARKFNVH PKELMRQNRL EMDTVLRPGD SITVTQE