Gene Dvul_2900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_2900 
Symbol 
ID4664919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand
Start bp3392331 
End bp3395471 
Gene Length3141 bp 
Protein Length1046 aa 
Translation table11 
GC content63% 
IMG OID639821161 
Producthydrophobe/amphiphile efflux-1 (HAE1) family protein 
Protein accessionYP_968338 
Protein GI120603938 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCTCTC GCTTTTTCAT CATGCGGCCC ATCTTCGCCA CGGTCGTCTC GCTGGTCATC 
ATACTGGCGG GCTTCATGGC GATGCGCGGG CTGCCCATCG CACAGTATCC CGACATCATC
CCGCCGCAGG TCGAGGTCGA GGCCACCTAC TCCGGGGCCA GCCCCGAGGT CGTGGCCGCC
ACCGTTGCCG CGCCGCTCGA ACAGCAGATC AACGGCGTGG ACAACATGCT GTACATCAAC
TCCACCAGTT CGAGTACAGG CACCATGAAC CTCATGGTGA CGTTCGAGGT GGGGACCGAC
CCCGACCAGG CGACCATCAA CGTCAACAAC CGGGTGCAGG CCGCGTTGCC GCAGCTGCCC
GAAGACGTGC GCCGCCGCGG CGTCACGGTG ACCAAGAAGT CGTCGAACAT GCTTCAGGTC
ATCTCCATGA ACTCGCCCGA CGAGCGGTAC GACACCATCT ACATCAGCAA CTATGCGCTG
GTGAACGTCA TCGATGAACT GCGCCGTCTC AAGGGCGTGG GTGACGTGGT GCTGTTCACG
GCGCAGGACT ACTCCATGCG CGTGTGGTTG CAGCCCGACA AGATGGCCCA ACTGCGCCTC
ACGCCTTCCG ACGTCATCGG TGCCATCCAG GAGCAGAACG CCCAGTTCGC CGCCGGTCGC
ATCGGGCAGC AGCCGCTGCA CGACCCGGTC GAACTGACCT TCATGGTCAA CACCAAGGGG
CGCCTCTCCA CCCCTGAAGA GTTCGAGAAC ATCATCCTCC GCGTCGAGGA GGACGGCTCG
ACCCTCAAGC TCAAGAGTGT GGCCCGCGTC GAACTCGGCG CCAAGGACTA CAACTTCATG
GGCAAGGAGA ACGGCAAGCC CACGGTTCCC ATCGGCATCT TCCTCGCGCC GGGGGCCAAC
GCGCTTGAGA CGGCAGACCG TGTCAGCGCG GCCATGGCCG AGATGTCGCT GCGTTTCCCC
GATGGTGTGA GCTATTCCAT ACCGTACGAC ACCACCAAGT TCGTGCGCGT CTCCATCGAC
GAGGTGGTCA AGACGCTGTT CGAGGCCATG GTGCTGGTGT TCATCGTCAT CTACCTGTTC
CTGCAGAACT GGCGTGCCAC CATCATTCCC TGCCTCGCCG TCCCGGTGTC GGTCATCGGT
GCGTTCGCGG GCATGTACAT GCTCGGCTTC ACCATCAACA CGCTGACCCT CTTCGGTCTG
GTTCTTGCCA TCGGCCTCGT GGTCGACGAC GCCATCATCG TGCTCGAGAA CGTCGAGCGC
ATCATGGCCG AAGAGCACCT GCCGGTGAAA CAGGCCACCA TCAAGGCCAT GCACGAAGTG
GCCAGCCCCA TCGTCGCCAC CGTGCTGGTG CTGTGCGCGG TGTTCATCCC CGTCGCCTTC
GCGGGCGGCC TCGCGGGGCA GATGTACAAG CAGTTCGCCA TCACCATCGC GGTGTCCATG
GCCATCTCCG GCCTTGTGGC GCTGACCCTT TCGCCCGCCC TGTGCGCCAT GTTCCTGAAG
CCGGGCCATC AGGAGCCCAA CAGGTTCTTC CGCTGGTTCA ACAACTGGTT CGAAGGCGTC
ACCAACCGCT ATACGGCGGG CGTCACGTTC CTGCTCAAGC GCATGGCGCT GGGCCTTGTG
CTCTTCGCCG GGTTGTGCGG TGTGACGTGG CACCTGTTCA GTATCGTGCC CGGCGGCCTC
GTGCCCGACG AAGACCAGGG GTATGTCATG GCCATGGCCA TCCTGCCCGA CGGTTCGGCC
CTCAACCGCA CGGAAGTGGT CACCGACCGT CTTGCCAAGG CGGCCTCCAA CGACTCCAGC
GTACAGAGCG TCATGGCCTT CACCGGCTAC GATGCGGTCT CCGGCACCAA CAAGCCCAAC
ACGGGCTTCA GCTGGATCAT GCTGAAGCCG TGGGAAGAGC GCAAGGAGGA GTCGGAATCG
TCATACTCGG TGGTGCAGCG CATCTTCAGG GAAGGTGCGG GCTATACCGA GGGCGTCGTC
ATCGCCTTCA ACCCCCCGCC CATCTCGGGC ATGAGCACCA CGGGCGGCTT CGAGGTGTAC
CTGCAGAACC GTGGCACCGG CGACAGCAAG GAGCTTGCGG CCATGGTGCA GAAGTTCGTT
GGCGCGGCCC AGAAGCGTCC TGAACTTGCA GGCGTCTCAT CCACCTTCGG TGCCAATACC
CCGCAGCTCT TCGTGGAACT CGACCGTAAC CGCGCCAAGG CGCTGGGCGT GTCCATCAAT
GAGCTGTTCG CCACCATGCA GTCGACGTTC GGAACCTACT ACGTCAACGA CTTCAACAAG
TTCGGGCGTA CGTTCATGGT CATGGTGCAG GCAGATGCCC AGTACCGCGA CAACCCCGAC
GACCTCACGA AGGTCTACGT GCGCTCGAAC AAGGGCGACA TGATCCCGCT CGCCTCGCTC
ATCAAGGTGG AGCGCATCAC GGGGACGGAA GTCGTTGAGC GCTTCAACGT GTTCCCCGCC
GCGAAGATCG TGGGCGGCCC TGCCCCCGGC TACAGTTCGG GACAGGCTCT TGCTGTCATG
GAGGAGCTCG CCGCCGAGGT GCTGCCCGCC GAGTATTCCC TCGGCTGGAT CGGCTCGGCC
TATCAGGAGC GCCTCACGGG CGGTACCTCG TTCATGGTGT TCGCCCTCGG CCTCGTGATG
GTGTTCCTCA TCCTCGCGGC GCAGTACGAG AAGTGGTCGT TGCCCCTGGC GGTCATCATG
ATCGTGCCCT TCGCCCTGTT CGGTGCCATG GCCGCCACAT GGCTGCGTGG CCTCGACAAC
GACGTGTACC TTCAGGTCTC GCTGGTGACA CTCATCGGCC TTGCGGCCAA GAACGCCATC
CTCATCGTGG AATTCGCCAT GATGCAGGTG CATGAGGGCA AGGGCATCGT CGAATCGGTG
ACCGAGGCGG CACGACTGCG TTTCAGGCCC ATCATCATGA CGTCCATGGC CTTCGTGCTG
GGCTGCGTGC CGCTGGCCAT CAGCTCGGGT GCTGGCGCGG CAGGACGGCA CGCCATCGGT
ACCGGCATCA TCGGCGGCAT GCTGGCGGCG ACCTTCATCG CCACCTTCTT CATTCCGCTG
TTCTTTAGGC TTATCATGGA ACTGAGCGCC CGTTTCACCG GCGGCCATCA GGCTTCCGGC
GACGGGGAGG AGGCACGATG A
 
Protein sequence
MFSRFFIMRP IFATVVSLVI ILAGFMAMRG LPIAQYPDII PPQVEVEATY SGASPEVVAA 
TVAAPLEQQI NGVDNMLYIN STSSSTGTMN LMVTFEVGTD PDQATINVNN RVQAALPQLP
EDVRRRGVTV TKKSSNMLQV ISMNSPDERY DTIYISNYAL VNVIDELRRL KGVGDVVLFT
AQDYSMRVWL QPDKMAQLRL TPSDVIGAIQ EQNAQFAAGR IGQQPLHDPV ELTFMVNTKG
RLSTPEEFEN IILRVEEDGS TLKLKSVARV ELGAKDYNFM GKENGKPTVP IGIFLAPGAN
ALETADRVSA AMAEMSLRFP DGVSYSIPYD TTKFVRVSID EVVKTLFEAM VLVFIVIYLF
LQNWRATIIP CLAVPVSVIG AFAGMYMLGF TINTLTLFGL VLAIGLVVDD AIIVLENVER
IMAEEHLPVK QATIKAMHEV ASPIVATVLV LCAVFIPVAF AGGLAGQMYK QFAITIAVSM
AISGLVALTL SPALCAMFLK PGHQEPNRFF RWFNNWFEGV TNRYTAGVTF LLKRMALGLV
LFAGLCGVTW HLFSIVPGGL VPDEDQGYVM AMAILPDGSA LNRTEVVTDR LAKAASNDSS
VQSVMAFTGY DAVSGTNKPN TGFSWIMLKP WEERKEESES SYSVVQRIFR EGAGYTEGVV
IAFNPPPISG MSTTGGFEVY LQNRGTGDSK ELAAMVQKFV GAAQKRPELA GVSSTFGANT
PQLFVELDRN RAKALGVSIN ELFATMQSTF GTYYVNDFNK FGRTFMVMVQ ADAQYRDNPD
DLTKVYVRSN KGDMIPLASL IKVERITGTE VVERFNVFPA AKIVGGPAPG YSSGQALAVM
EELAAEVLPA EYSLGWIGSA YQERLTGGTS FMVFALGLVM VFLILAAQYE KWSLPLAVIM
IVPFALFGAM AATWLRGLDN DVYLQVSLVT LIGLAAKNAI LIVEFAMMQV HEGKGIVESV
TEAARLRFRP IIMTSMAFVL GCVPLAISSG AGAAGRHAIG TGIIGGMLAA TFIATFFIPL
FFRLIMELSA RFTGGHQASG DGEEAR