| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_2512 |
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| Symbol | |
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| ID | 4664878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | + |
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| Start bp | 2933205 |
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| End bp | 2936402 |
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| Gene Length | 3198 bp |
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| Protein Length | 1065 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639820761 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_967955 |
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| Protein GI | 120603555 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.612472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.56879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTTT CCCCCGAAGG CAGCCAGTCA CCTCGCACGC TTCAGACGGC AGAAGCCACC
AACTTCGCTG TCCTGCGCGT GGGCGTCGAC GGCGTGGTAC GACACGCCGA CGCCAGCGGG
GAGGCCCTCC TCGGAGAGGT GTGCGGCGTA CGCCTCGAGA CAGTGCTGCA GACGACGCCC
CGCACCCCTG TCCCTCCATG GTCGGGCAAT GCCCTCCTGC TGTGCCGCGA GGGGCCGACA
GCGTGCAGGG CAACGTTCAC CTCGCTTCCC GGCGAGGATG GTCTTCTGGT ATGCCTAGAC
CTCACGCCCC CTTCTGCAGA CACGTTGCTC TCACTCCGTC ATAGCGGTCT GCCCGTAGCC
CTGCGTGACG CAGACTCCAT CTTCCGCTTC GTCAGCCCCG CCTTCGCGGC GCTCTTCGGC
ATCCCCGAAC GTGCATTCCG TAACGCCCCG CCCGAAAGCG TGCTCCCCAA GAGCAGCGCC
AGAGCACTAC GGCAGGCGGA CAGGGCCACG CTCTTGCGTA TGGAGGCCCA CGCGCACACC
ATCCCCCTCT CCGCAGAGGA ACAACCCGTG CGGTGCACCT CAATCCCCCT GCCGCGAACG
GCGTGGGGAA CAGCGGTCCT GTCGATAGTC CTCCACACGG ATGACGACAC CTTCGCGCCC
GATGTCGACC CGGCATCGGG CATGGGGCCT TACGCCCCGT GGCAGATTCT GCTGGATGAG
ATGCCGGGAC TGCTCGCCCT CACGGACTTC GAGGGGCGGG TCCAGTTGCT CAACAAGGCG
GGCCACACCC TCTTGCGCCT TCCGGAGGGC ATCGCACGCG GCAGGCACCG TGCCGAACTC
CTGCCCGAAC GCATCGCCGC GCTGCTGGCG GCCGACAATG AACGGATGCA GCGTGAAGGC
ACCCCGTCAC AACTGGAAGT CACCCTGTCG CGATACGGAC ACGATGGCAG TGACAGGACG
TTCCTCGTGC AACGTTTCCC GGTTCGCGAC CATTCCGGAG GCATGCAAGG GGTCGGCACG
GTCGCCATGG AAATCTCCGC CCTCAAGAAC ACCGAGGCGG GACTGCGCCA GCGACTCACC
AACATCGAGG CCATGGTCGC GACCCGCACG GAAGAACTGC GTGTGGCCAA CGAGGCACTC
CACCGCTCCT CCACACGCTT CCGCGCCCTC TTCGACTACG CGCCCGACGG ACTGCTACTC
CAGCGGGACG ACGGGACCCT GCTCGATTGC AACCGCATGG CCGAAGCCAC CCTCGGGCTG
TCGCGCCATG AACTGCTGGC CCTGAAAGCC CGCGACATAT GCCGGGAAGG GCACGCCCTG
CCCGTCCCGG AGAGTGAAGA CACCCCGCTG CGCACCCGTA CCGAGCTTCT CCGCGGGGGC
GTAGCGTTCC CTGCTGAAGT CAGCGTCCGT TCTCTGGACA TCGAGGGAGA GCGCACCCTT
CTCGTCGCAC TCCGCGACAT CTCGTCGCGG ATTCACACTG AGCACCGCCT CAACCTCTTC
GAACTCGTCT TCCGCAATGC GCTTGAGGGC ATCCTCATCA CCGACGCCTC GGGCGCCATC
CTCGCCGTCA ACCCGGCATT CACCACCATC ACCGGCTGGA ACGAACGCGA CGCCGTGGGG
CGCAACCCGC GCATCCTCAA ATCCAACAGG CATGACCGCG GATTCTACGA ACGCCTGTGG
CACTCGCTAC ATGAACGCGG CGCATGGGAA GGCGAGATAT GGAACCGCCG CATCAACGGC
GAGAACTACC CTGAATGGCT CAGCATCAGT GCCATCCGCG ACGAGTCGGG CGCCACGACC
AACTATGTGG CCCTCTTCCA CGACATCTCG GACCTCAAGG CCAAGGAGGC GCAGATACGC
TATCAGGGGA TGCACGACGC CCTCACCGGA CTTCCCAACC GTGCGTTGCT GCTGGAACGT
CTGGCAGGCG AACTCAAGGA GGGACAGGGC ACGGGCAGGC TATGCGGGCT GCTGTACATC
GACATCGACA ACTTCAAGAC CATCAACGAC AGCCTCGGGC ATGAGGCCGG TGACAAGTTC
ATTGCCGAGG TGGCAGAGCA TCTCACCCTG CTCATCCGTC CCGAGGACAC CCTCTCGCGG
CTTGGGGGTG ACGAGTATGT CATCCTTGTG GCCAACCCCG GTGAAGAACG CGAGGTCGTG
CTCGTGGCCG AGCGCATCCT GCATCACTTC TCGCAACCTA TCGCACTGCT CGACAGGGAA
CTCCATGTCG GGCTCAGCAT CGGCATCGCC ATCCATCCCG CCGACGGCAA GGGGCCGGAC
GAACTGCTCA CCAACGCCGA CCTCGCCATG TATCGCGCCA AGGCGCAGGG CAAGAACACC
TATGAGCGGT TCTCGCCCCA CCTCCACGAC AGGATACGCA GCCGCATGGA ACTCGAGGGA
CGATTGCGCC ACGCCTTGCG TCATGGCGAA ATCGTGCCGC ACTTCCAGCC CCGTGTGGAC
CTCGCCACCG GGCGCATCGT GGGGGCCGAG GCACTGGCCC GATGGACACT GCCCGATGGG
ACACGCATCT CGCCCGGCGA GTTCATTCCC GTAGCCGAAG ACCTTGGCCT CATCTTCGAC
CTCGGCGAAC ACATGCTTCG CAGTTCACTC GCCTTCACCC GCGCACTCAT GGATGAAGGA
CTGCCCGACA TCACCATGGC GGTGAACCTG TCACTGGTGC AATGCCGCCA CGCAGACCTT
GTGGGGCGAG TGCTGGCTGC GCTTCGTGAT ACGGGCGTCC CGCCCGAGCG CCTCGAACTC
GAAATCACGG AGAGCGCCAT CATGTCGGAT GTGACGCGCA CCCTGCGCCG ACTCGACCGG
CTGGCGGCCC TCGGCATCAC GCTCGCCGTC GACGACTTCG GCACGGGGTA TTCCTCGCTG
TACCACCTCA AGCACATGCC CCTGCACACC CTGAAGATAG ACCAGAGTTT CGTGCGCGAC
CTGCCCCACG TGGCCGGAAG CCGCACCATC GCCCTGACCA TGCTCGCCAT GGCACGCAAT
CTCGACCTCG ACGTCATCGC CGAAGGCGTG GAGACCGGTG CGCAGATGCA CTTCCTGCGT
GACCATGGCT GCCGGGTTGT GCAGGGCTTT CTCTTCAGTC CCGCCGTACC CGGAGACCGG
CTGTTCGACC TGCTGCGCCG GGGCGTCTGC TTCGACGTCA ATGTCGCGCC CGGCGAACTT
TCATTCGACC ATCCCTGA
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| Protein sequence | MRLSPEGSQS PRTLQTAEAT NFAVLRVGVD GVVRHADASG EALLGEVCGV RLETVLQTTP
RTPVPPWSGN ALLLCREGPT ACRATFTSLP GEDGLLVCLD LTPPSADTLL SLRHSGLPVA
LRDADSIFRF VSPAFAALFG IPERAFRNAP PESVLPKSSA RALRQADRAT LLRMEAHAHT
IPLSAEEQPV RCTSIPLPRT AWGTAVLSIV LHTDDDTFAP DVDPASGMGP YAPWQILLDE
MPGLLALTDF EGRVQLLNKA GHTLLRLPEG IARGRHRAEL LPERIAALLA ADNERMQREG
TPSQLEVTLS RYGHDGSDRT FLVQRFPVRD HSGGMQGVGT VAMEISALKN TEAGLRQRLT
NIEAMVATRT EELRVANEAL HRSSTRFRAL FDYAPDGLLL QRDDGTLLDC NRMAEATLGL
SRHELLALKA RDICREGHAL PVPESEDTPL RTRTELLRGG VAFPAEVSVR SLDIEGERTL
LVALRDISSR IHTEHRLNLF ELVFRNALEG ILITDASGAI LAVNPAFTTI TGWNERDAVG
RNPRILKSNR HDRGFYERLW HSLHERGAWE GEIWNRRING ENYPEWLSIS AIRDESGATT
NYVALFHDIS DLKAKEAQIR YQGMHDALTG LPNRALLLER LAGELKEGQG TGRLCGLLYI
DIDNFKTIND SLGHEAGDKF IAEVAEHLTL LIRPEDTLSR LGGDEYVILV ANPGEEREVV
LVAERILHHF SQPIALLDRE LHVGLSIGIA IHPADGKGPD ELLTNADLAM YRAKAQGKNT
YERFSPHLHD RIRSRMELEG RLRHALRHGE IVPHFQPRVD LATGRIVGAE ALARWTLPDG
TRISPGEFIP VAEDLGLIFD LGEHMLRSSL AFTRALMDEG LPDITMAVNL SLVQCRHADL
VGRVLAALRD TGVPPERLEL EITESAIMSD VTRTLRRLDR LAALGITLAV DDFGTGYSSL
YHLKHMPLHT LKIDQSFVRD LPHVAGSRTI ALTMLAMARN LDLDVIAEGV ETGAQMHFLR
DHGCRVVQGF LFSPAVPGDR LFDLLRRGVC FDVNVAPGEL SFDHP
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