Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dvul_2382 |
Symbol | |
ID | 4663100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris DP4 |
Kingdom | Bacteria |
Replicon accession | NC_008751 |
Strand | - |
Start bp | 2778591 |
End bp | 2780210 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639820630 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_967825 |
Protein GI | 120603425 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0222564 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACGTG TGCCAGTTTG CGGGAATCCG GAGGAATGGA TGAAGCTCAA GCTCGAACTG GTGTTCAAGG ACAGGGTTGG CATCGTCTCG GATGTCTCGT CACTGCTGGC CGGAGAAGGG TATTCCATCG TCTGCATGGA GGTCGAACGT CGGCATGACC GGTCGCACGT CCATATCGAG GCCGATGGCG CGGGAGAGGG GGCCTTCGCC GCACTGCGGC AGCGGTTCGA GTCCATGCGG GGACTGCTCG AATGCCGCGA AGTGCAGACC CTGCCAGCCG AAGAGCGCGA GAACCGCATC AAGGTGGTGC TCGACACCAT CGGGGATGGC GTCATGTCCA TCGACGGTGG CGGGCGCATC ACCTCCATCA ACAAAGTCGC CCGCGAGGCC TACGGTTGCG CCGGAGAGGA CGTGACGGAG CGCAGTCTCA CCTCGCTACG CCTGCCCGAC CATGGGCTTC TCGACTGCCT GCACGGGCGT GAATTGCACG ACGCCCGACG CGAACTCGCA ACCCCGCTCG GGAAGTTGCA GTTCTTCGTC ACCCGAACCC CCATACGCGA TGGTGTGGGG CGCATCATCG GCGCGGTGGA GATTGCCCGC GACATGCGCG AGATACGTAA ACTCGCCCGA ACTCTCGTCG ATGCCGACCA TGTGGGTTTC GACGACATCG TGGGCCACCA CCCGGCCATC GAAGCCGCCA TCGCCTTCGC ACGCCGGGTC GCAGCCACGG ATGCCGTCAT CGCCATCAGG GGCGAGTCGG GAACCGGCAA GGAGCTTTTC GCCCGTGCCA TGCACGCCGA AAGCGGACGC AAGGGACCCT TCGTGCCCAT CAACTGCGCG GCACTGCCCG AACAGCTTCT GGAGAGCGAG TTGTTCGGGT ACGAGCGCGG GGCCTTCACG GGCGGCAGGC GTGAGGGCAA GCCGGGGCTT TTCGAATCGG CGCGTGGCGG CACTGTCTTC CTCGACGAAA TCGGCGACAT GCCCCTTGCC TCGCAAGCCA AGATTCTGCG CGTGATGCAG GAACAGAGGG TGCGCCGCAT CGGCGGAGAG GCCGAAGTGC CTGTGGATGC GCGCATCATC ACGGCGACGA ACAGACCCCT TGAGCGCATG GTCGAGGATG GACGTTTCCG GCAAGACCTC TACTATCGCA TCAACGTACT GCCCATGCAC ATACCGCCCC TGCGCGAACG ACGCGGGGAT ATCCCGTTGC TGGCGAATCA CTTCCTGCAG CAACTCGCGT CACGCATCGG CGGGGCCGCC CCGGCGTTCA CCGACGGGGC GCTGGCCCGG CTGCGGTCGC ATGAATGGCC GGGAAACGTG CGCGAACTCA AGAACGTGGT GGAACGTGCC GCCATCCTTG CCGGTGGTGC CGTGGTGGAC GACCAGTTCA TCCTGTTCAG TCATGAGTTG GGCAAGGGCG TGTTCAACGC GGCGCGCACA GCCTCTGCTG CGGGGCAGGG CGATACTCTG AAGGAGCAGG TTGCCAATTT TGAAAAGAAA ATCGTCGAAG ATGTGGTCCG CCGCGCACCT TCCATTCGAA AGGCAGCGAA AATACTAGGA ATATCGCACA CGGCGCTTCT CGATAAGATG CGGCGTCACG GCGTCATTCT GGAAGAATGA
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Protein sequence | MARVPVCGNP EEWMKLKLEL VFKDRVGIVS DVSSLLAGEG YSIVCMEVER RHDRSHVHIE ADGAGEGAFA ALRQRFESMR GLLECREVQT LPAEERENRI KVVLDTIGDG VMSIDGGGRI TSINKVAREA YGCAGEDVTE RSLTSLRLPD HGLLDCLHGR ELHDARRELA TPLGKLQFFV TRTPIRDGVG RIIGAVEIAR DMREIRKLAR TLVDADHVGF DDIVGHHPAI EAAIAFARRV AATDAVIAIR GESGTGKELF ARAMHAESGR KGPFVPINCA ALPEQLLESE LFGYERGAFT GGRREGKPGL FESARGGTVF LDEIGDMPLA SQAKILRVMQ EQRVRRIGGE AEVPVDARII TATNRPLERM VEDGRFRQDL YYRINVLPMH IPPLRERRGD IPLLANHFLQ QLASRIGGAA PAFTDGALAR LRSHEWPGNV RELKNVVERA AILAGGAVVD DQFILFSHEL GKGVFNAART ASAAGQGDTL KEQVANFEKK IVEDVVRRAP SIRKAAKILG ISHTALLDKM RRHGVILEE
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