| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_2249 |
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| Symbol | |
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| ID | 4663783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | + |
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| Start bp | 2615231 |
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| End bp | 2618086 |
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| Gene Length | 2856 bp |
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| Protein Length | 951 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639820494 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_967692 |
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| Protein GI | 120603292 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.466049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGTTT GGTCATCGGG CTTCCCATCG TTGCAGTGTC ACGTTACGAT GTGCCCACAA
ACGTCGACGG AATCCGCCAT GCAGACACTC GCCCGGAAAA GCGCCCTGCT CTTCATCGCC
GCCATGTGCT CATTGACGGC GCTTGTCCTC GTCACTGCGC GCTATGCCTT TGTCGATTCG
TTCACGCGTA TCGAAACGCG CGAGGCCCTT TCGGCCACCC GACAGGCACA GGCACTCCTG
CTGGCTTCCC GGGATGCCAT GCACCGCCAG TGCGCCGACT GGGCCGCGTG GGACGACAGC
TACGAGTTCG TCACCAGAAG GGATACCGAT TTCGTAGAAC GCAACGTCAC CCTGCAGGCG
TTCAGTGACA ACGACGTCGA CCTCATGGCC TTCTACGACG CGCAAGGGCA GCCCATCCTT
GTCCGCATGC GGGGCGCGGA CAACAGCTAC TTCCGCGACC CCCCGAAAGA CCTGACGGAT
GCTCTGGCCC CACAGGGTGA ACTTGGCCGC AAACTTGCGA ACGACGCCCC CTTTGCCGGT
TTGCTGTCAC TGTATGAGGG GCCTCTCTTC GTCAGTGCCC GTCCCATAAC CCGCAGTACC
GACCCCACGC GACGCGGTGG ATGGCTCGTC TGGGGACGTT ATGCCCTCGG GGCGTTACCG
CCGTTCTTCT CCGACCTTCT TCCCCATGCC GCCCAGTTGT TCACTCCGGG CTCATATGAC
ACCCCGCCGC AAGTCGCAGC GTTGTTCACG TCCGCCGCAA AGAGGGACCC GCAGGTAAGG
CCGCTGGACG ACTCGACCAT GGAAGGCCTA GCGGTACTGA CGGATATCAA GGGCGACCCC
GGACTCGCCA TGCGCATATT GATGCCTCGC GAAGCCTCGG AACAGGGGCA CAAGGCACTC
ATGCTCTTCA GCCTCGTGAT CCTGGTGGGT ACAGCCCTTG TGGCCGCCAC TGCACAGGTT
CTTTTCCAGA AGCATGTCGG TCGGCGGGCC GCATCTCTCG CCGCCGACAT AGAGCGCGTG
CGCATCTCCG GTTTCCGCTC ACCGCTACCT GCTGACGGCG ATGACGAAAT CGCTGCCATC
GGCCATGCCA TCAACAGACT CATCCGCGAC CGTGAACAGG CTGCGCACAC GTTGCAGGAG
AACGAGGCGT TTTTCCGGCT ACTCTATGAA CAGGCACCCG ATGCCATGCT CCTGCTCCTC
GACGAGAGCA TCGCCAGTGC CAACGACGCA GCTGCGCGGC TGCTTGGCGT TGCCGACAGA
AAGGACCTGC TCTCGCATCC GCTCATCGAA TTCTTCCCAC CAGCGCAGGA GGGGGGCATC
CCTTCGGTCG AGGGGTTCGC ACGCCAGGTG GAGAACACCA CCCCGCTGGG CAATCGCCGC
TTCGAATGGA TATTCATGCG TTCAGGCGGC AGCGAGGTGC CCTGCGAGGT GACGCTGTCA
CCCGTCATGC AACGCGGACG AAGGATGCTG CACCTGACTG CACGCGATAT TTCAGAACGC
AAGAGGAACG AGGCACAGAT AACGCACCTC GCCTTTCATG ACAGCCTCAC CGGGCTGGCC
AACCGGGTGC TGTTCCTCGA CAGGCTGGCC CACGCCATAG CCACCTGCCG ACGCGCGCCC
GACCGTAACT TCGCGGTGCT GTTCATCGAC CTCGACAGGT TCAAGGTCAT CAACGACAGC
CTCGGCCATG CCGCCGGAGA TGGCCTTCTC TCGATCATCG CTTCAGCCAT CGCCGCCAAC
ATCAGGGAGA CCGATACGGT CGCGCGCATC AGCGGCGACG AATTCACCGT GCTGGTGCAT
GAGCCGCCCT CACCGCGTTT CGCCATCAAG ATGGCGCGCC GCATCCTCGA ACGCATCAAG
CAACCGCTCA CCATCGAGGG GTTCGAACTT GTCATCTCCG CCAGCATGGG CATCGTCATC
GGCAATTCGG GGTACACCGA CCCGCATCAG GTGCTGCGGG ATGCCGACAT CGCCATGTAC
AAGGCGAAAC GGGCAGGCAA GGACAAGCTA CGCGTGTTCG GTTCCCGGAT GCATGAACAG
GCACTGCATG CCATGCGCCT TGAGAACGAC CTGCGGCAGG CCATCGACAA CGGAGACCTG
TCATGCCACT ACCAGCCCAT CGTCAATCTC GAATCCGGTG CGCTTGAGGG ATTCGAGGCT
CTCGCACGCT GGCAGCACCC CACGCTGGGC AACATCCCCC CGTCCACCTT CATCCCCATC
GCCGAAGACA CGGGACGCAT CATCCCCCTT GGCAGGGCGA TGCTGCACAA GGCATGTGCC
TTTGCAGCCT CCATCCGGGG TACCCTGCCG CAGGGCGACC CGGTCATTCA CGTCAACCTT
TCGCCGCGCC AGTTCCTTTC GAGGCAGCTG CTGCGAGAGG TCGAAGCCGC CCTTGACGCC
ACTGGCCTGC CACCCGAGTT GCTCGTCCTT GAAATCACCG AATCGCTGCT CATGGAGAAT
CCGCGCGTCG CCAAGAGCAT CATGGCCGGT CTGAAGGAAA TCGGGGTACG CCTCTCGCTG
GACGATTTCG GCACCGGCTA CTCCTCCCTC GGCTCATTGC AGGACTACCC GCTCGATTCG
GTCAAGATCG ACCGCAGCTT CATCCGGGCC ATGAATGACG GGCGCGATGC CGAACATATC
GTCCGGGCCA TCCTGAAACT CGTGTCACAC CTGCGGCTTG AAGCCATATG CGAAGGTGTC
GAGACCACCA TGCAAGCAGC CAACCTCATG GCCTTCGGGG CGACGAGGAT GCAGGGCTTT
CTCTTCGCGA AGCCCATGCC TTCCGAGAAG GCCCGGTCAC TGCTTGAAAG ACTCGCCCTC
GGTGAACGCT TCACCCTCAC GGGCATGGGC AGCTGA
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| Protein sequence | MIVWSSGFPS LQCHVTMCPQ TSTESAMQTL ARKSALLFIA AMCSLTALVL VTARYAFVDS
FTRIETREAL SATRQAQALL LASRDAMHRQ CADWAAWDDS YEFVTRRDTD FVERNVTLQA
FSDNDVDLMA FYDAQGQPIL VRMRGADNSY FRDPPKDLTD ALAPQGELGR KLANDAPFAG
LLSLYEGPLF VSARPITRST DPTRRGGWLV WGRYALGALP PFFSDLLPHA AQLFTPGSYD
TPPQVAALFT SAAKRDPQVR PLDDSTMEGL AVLTDIKGDP GLAMRILMPR EASEQGHKAL
MLFSLVILVG TALVAATAQV LFQKHVGRRA ASLAADIERV RISGFRSPLP ADGDDEIAAI
GHAINRLIRD REQAAHTLQE NEAFFRLLYE QAPDAMLLLL DESIASANDA AARLLGVADR
KDLLSHPLIE FFPPAQEGGI PSVEGFARQV ENTTPLGNRR FEWIFMRSGG SEVPCEVTLS
PVMQRGRRML HLTARDISER KRNEAQITHL AFHDSLTGLA NRVLFLDRLA HAIATCRRAP
DRNFAVLFID LDRFKVINDS LGHAAGDGLL SIIASAIAAN IRETDTVARI SGDEFTVLVH
EPPSPRFAIK MARRILERIK QPLTIEGFEL VISASMGIVI GNSGYTDPHQ VLRDADIAMY
KAKRAGKDKL RVFGSRMHEQ ALHAMRLEND LRQAIDNGDL SCHYQPIVNL ESGALEGFEA
LARWQHPTLG NIPPSTFIPI AEDTGRIIPL GRAMLHKACA FAASIRGTLP QGDPVIHVNL
SPRQFLSRQL LREVEAALDA TGLPPELLVL EITESLLMEN PRVAKSIMAG LKEIGVRLSL
DDFGTGYSSL GSLQDYPLDS VKIDRSFIRA MNDGRDAEHI VRAILKLVSH LRLEAICEGV
ETTMQAANLM AFGATRMQGF LFAKPMPSEK ARSLLERLAL GERFTLTGMG S
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