Gene Dvul_1978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_1978 
Symbol 
ID4663536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand
Start bp2299575 
End bp2300945 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content59% 
IMG OID639820219 
ProductTolC family type I secretion outer membrane protein 
Protein accessionYP_967421 
Protein GI120603021 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.143142 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTCAT CAATCTGCAA AAAAATGATC ACAGGCGCAA CCGCGTGCGC TCTTATTTCT 
GCATCAGGTG CTTTTCTGTC TCTTCCAGAC GTCTCGTTCG CAGAGACCAA ACTGAAGGAC
AGCGTTCTTT CTACGATCAA CAGCAACCCG AAGCTGAAAG TCTTCCAAGA GAATCGAGAA
GCTGCAACGC ACGATCTTCG CCGTGCAAGA GCAGGATGGC TGCCGCGCGT TGATGTTCGC
GCAGGATACG GCGCAGAACA ATACAGCGAC ACGACTTCAA GACAGTCCAA CAAGGACGAT
GAATTCACCG AACGTGGCGA CGCCTCGGCC GTACTCACGC AGACCGTCTG GGACGGCTTC
GCGACTTCAA GCCGTGTAGA TGTCGGCAAG GCCAAACTCG ACTCTGCCGA CAACAGGCTG
ATGGATAACG CCGAAGCCCT CGGACTCGAC GCAGTGCTCG CCCACATCGA GGTGCTGCGC
CAGCGCGAAA TCGTCAGGCT GTCCGAGATC AACGTCCAGC AGCACCAGAC CATCCTCGGC
TCGCAGAGTG AACGGCAGAA GATGGGTGTG GCCAGCATCG CCGATGTCAC CCAGACACAA
GGCCGACTTG CCCGCGCCCA ATCCACTCTC GTGGAAAGCA GGAGTGCCCT CGAAGTTGCC
GAAGCCGCCT ACAAGCGCCT GACCGGCATG GAGGTTCCCA CCGAACTCGA ACGGGCCGGC
ATTCCCGACA CCGCGCCCGC CAGCTTCGAG ACGGCACTGG GGGCGAGCCT GACGGCCAAC
CCCAAAATCG CCGCCTACCA GTCTGATATT CAGGCGGCCC GCGGTCAGGA AGACCTCGAC
AAATCGCGTT TTCACCCTAA TGTATATCTT GAGGTCGGCC CTTCATACAA GGAGCGCGTA
GAGAGCAGCG AATCCTACGC ATGGGGTACA ACGGCCATGA TGCGCGTGAA CTGGAACATC
TACGACGGCG GTGCAGACGT TGCAGCCGTG AGAGGTTCGG CCGCACGTGT TCGCCAGAGC
AGACAGGAAC TCCAGAACCT GCTCGACACC CTGAACGAAG AGACCCGTGC CACCTGGAGC
CGTTACCTTT CAGCGCACGA GCAGAGCAGT TTCTACACCA CGGCGGTCAC GTACAACACC
CAGACGCGCG ACACATACAT GCAGCAGTTC CTCGTCGGCC AGCGCAGTCT GCTTGACGTT
CTCGACGCCG AGAATGAACT GTACAGCTCC GAAGTGCAGC TTGTGACTGC GAAGGCCAAC
GAAGCCGGAA CAGCCTACCG CCTGCTCGCA CTTGGCGGAA ACCTTCTTGC CTCCCTGTCC
ATCGACAGAA GTGAACTGCG AAACGTGCCC GAAGAAGGCA CCATCCGCTA G
 
Protein sequence
MKSSICKKMI TGATACALIS ASGAFLSLPD VSFAETKLKD SVLSTINSNP KLKVFQENRE 
AATHDLRRAR AGWLPRVDVR AGYGAEQYSD TTSRQSNKDD EFTERGDASA VLTQTVWDGF
ATSSRVDVGK AKLDSADNRL MDNAEALGLD AVLAHIEVLR QREIVRLSEI NVQQHQTILG
SQSERQKMGV ASIADVTQTQ GRLARAQSTL VESRSALEVA EAAYKRLTGM EVPTELERAG
IPDTAPASFE TALGASLTAN PKIAAYQSDI QAARGQEDLD KSRFHPNVYL EVGPSYKERV
ESSESYAWGT TAMMRVNWNI YDGGADVAAV RGSAARVRQS RQELQNLLDT LNEETRATWS
RYLSAHEQSS FYTTAVTYNT QTRDTYMQQF LVGQRSLLDV LDAENELYSS EVQLVTAKAN
EAGTAYRLLA LGGNLLASLS IDRSELRNVP EEGTIR