Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dvul_1978 |
Symbol | |
ID | 4663536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris DP4 |
Kingdom | Bacteria |
Replicon accession | NC_008751 |
Strand | + |
Start bp | 2299575 |
End bp | 2300945 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 639820219 |
Product | TolC family type I secretion outer membrane protein |
Protein accession | YP_967421 |
Protein GI | 120603021 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.143142 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCAT CAATCTGCAA AAAAATGATC ACAGGCGCAA CCGCGTGCGC TCTTATTTCT GCATCAGGTG CTTTTCTGTC TCTTCCAGAC GTCTCGTTCG CAGAGACCAA ACTGAAGGAC AGCGTTCTTT CTACGATCAA CAGCAACCCG AAGCTGAAAG TCTTCCAAGA GAATCGAGAA GCTGCAACGC ACGATCTTCG CCGTGCAAGA GCAGGATGGC TGCCGCGCGT TGATGTTCGC GCAGGATACG GCGCAGAACA ATACAGCGAC ACGACTTCAA GACAGTCCAA CAAGGACGAT GAATTCACCG AACGTGGCGA CGCCTCGGCC GTACTCACGC AGACCGTCTG GGACGGCTTC GCGACTTCAA GCCGTGTAGA TGTCGGCAAG GCCAAACTCG ACTCTGCCGA CAACAGGCTG ATGGATAACG CCGAAGCCCT CGGACTCGAC GCAGTGCTCG CCCACATCGA GGTGCTGCGC CAGCGCGAAA TCGTCAGGCT GTCCGAGATC AACGTCCAGC AGCACCAGAC CATCCTCGGC TCGCAGAGTG AACGGCAGAA GATGGGTGTG GCCAGCATCG CCGATGTCAC CCAGACACAA GGCCGACTTG CCCGCGCCCA ATCCACTCTC GTGGAAAGCA GGAGTGCCCT CGAAGTTGCC GAAGCCGCCT ACAAGCGCCT GACCGGCATG GAGGTTCCCA CCGAACTCGA ACGGGCCGGC ATTCCCGACA CCGCGCCCGC CAGCTTCGAG ACGGCACTGG GGGCGAGCCT GACGGCCAAC CCCAAAATCG CCGCCTACCA GTCTGATATT CAGGCGGCCC GCGGTCAGGA AGACCTCGAC AAATCGCGTT TTCACCCTAA TGTATATCTT GAGGTCGGCC CTTCATACAA GGAGCGCGTA GAGAGCAGCG AATCCTACGC ATGGGGTACA ACGGCCATGA TGCGCGTGAA CTGGAACATC TACGACGGCG GTGCAGACGT TGCAGCCGTG AGAGGTTCGG CCGCACGTGT TCGCCAGAGC AGACAGGAAC TCCAGAACCT GCTCGACACC CTGAACGAAG AGACCCGTGC CACCTGGAGC CGTTACCTTT CAGCGCACGA GCAGAGCAGT TTCTACACCA CGGCGGTCAC GTACAACACC CAGACGCGCG ACACATACAT GCAGCAGTTC CTCGTCGGCC AGCGCAGTCT GCTTGACGTT CTCGACGCCG AGAATGAACT GTACAGCTCC GAAGTGCAGC TTGTGACTGC GAAGGCCAAC GAAGCCGGAA CAGCCTACCG CCTGCTCGCA CTTGGCGGAA ACCTTCTTGC CTCCCTGTCC ATCGACAGAA GTGAACTGCG AAACGTGCCC GAAGAAGGCA CCATCCGCTA G
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Protein sequence | MKSSICKKMI TGATACALIS ASGAFLSLPD VSFAETKLKD SVLSTINSNP KLKVFQENRE AATHDLRRAR AGWLPRVDVR AGYGAEQYSD TTSRQSNKDD EFTERGDASA VLTQTVWDGF ATSSRVDVGK AKLDSADNRL MDNAEALGLD AVLAHIEVLR QREIVRLSEI NVQQHQTILG SQSERQKMGV ASIADVTQTQ GRLARAQSTL VESRSALEVA EAAYKRLTGM EVPTELERAG IPDTAPASFE TALGASLTAN PKIAAYQSDI QAARGQEDLD KSRFHPNVYL EVGPSYKERV ESSESYAWGT TAMMRVNWNI YDGGADVAAV RGSAARVRQS RQELQNLLDT LNEETRATWS RYLSAHEQSS FYTTAVTYNT QTRDTYMQQF LVGQRSLLDV LDAENELYSS EVQLVTAKAN EAGTAYRLLA LGGNLLASLS IDRSELRNVP EEGTIR
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