| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1867 |
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| Symbol | |
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| ID | 4662759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | - |
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| Start bp | 2176130 |
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| End bp | 2178910 |
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| Gene Length | 2781 bp |
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| Protein Length | 926 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639820108 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_967311 |
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| Protein GI | 120602911 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.233383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACTC TGCCCGATAG CCGCGAATCC CGTGATATGC CTTCCGGTAA GGAAGGCGGT
CTCCCCGGGA GTGCGCACGA AGCCCCGATT GTTGCCGGGG GGGATGTCTC GCGTTCCTCC
GACAGCACCG GCCTTGAATA TGCTTCGGCT GCAGCACCCG TGGGCGACTT GCTGCGGGCC
GTACGTGGCG GCATGCATGG TGTGACGGCC TCCCGTGGGG GTGTGTCCGG TGCCAATGCC
AGTGTGGGGG TGGCGGTTTT CGACGGTGCC GGCAACCTGC TGGAGATGAA CCCGCAGCTG
GCACGCCTTC TGGGGTGCGG TGACTGCCCG CCGCCTTCCC TCTTCTCTTC GGGTTTCGTC
GGCCTTGAAG GCACGACAGA GGTCCTTTCG CTGTTCATGC GCATCGCAGC CGGAAAGGTT
CCGGGGGGCA TGTGCCGCAA GCGGTTTTGC GGCGAGGGCG GCAAAACGTT CACTGCGCGG
GTGACTCTCT ACGCCGAACA TGACATCTCT GGGCGCGTCG CACGCATCGT CAAACTGGTG
CAGCCCGAGG CGGGAGAGGA TGCCTCTGTT CCGGGGGCGG ACGTGGCCGA CAAGGTGCGC
GCCGCACTCG ACCTCATCGC CTACGCGCGT CTCAATGAAC GTGACCTGCC TTCCCTGGTG
GCGCGCTTCC ATCGCATACT CCGGTCGCTG ATGCCGTTCG AACATTGCTA TGTCGCACTC
TGCGACGGGC CGGGCGGCAT GGTGAGTTAT CCCTACTATC GCGACATCGG TGTCGTCAGC
CGCGATGCCC GCGCCTTCGG CGATGGCATC AGCGAGTACA TCTACACGAA CGGTGCTGCG
CTGGTCCTTG ATGCGCAGGG GATAGAGTCG CTTGAGCGCG CGGGGCGCTT CCGCCTGCGT
TGTGCGCGCC CTCGGCACTG GATAGGCGTT CCGCTGCGGA CGCACGGGGG CGAGGTCATC
GGTGTCTTCG CGGGCAAGAG TTATCGTGAG GGCGATGCCT ACACGGTCGA AGACCGGTTG
CTTCTCGAAC TGGTCTCGGG ACATGTGGCG GGGGCCATCA TCGAGCGGCG CAAGGCGTTT
GCGCTACAGG AAAGCGAAGC ACGGTTCAGG GCCATCTTCG AGCATTCAGC CGCCGGCATC
TGCCTTGTAG GGCGTGACGG CCTGCTGATG GATGCCAACC CTGCCTTCGA GGAACTGCTC
GGGCTGACAC GTGCCGAAGT GGTGGGGTGC CGCTTTGACG CCTTCCTGCC CGTGAAGGCC
GCATCCGAGC TCGATTCCAC CTGCCGCAGC TCTTTTGCCG AGGGGCGCGA CACCGTGTCA
CTGCGGCTGC CGTTCCTGCG GGTGGATGGC GAGCAGCGTT GGGGCAGACA GATCGTCACC
GCCGTGCGCG ACGTGGCGGG TGATGTGGCC TTCGTGCTTG CGCAGGTCGA GGACATCACA
GAGCAGCAGC AGACCGAGGC GCGGCTGACA CGCATGGCCT TCCATGATGC GCTCACCGGC
TTGCCCAACC GCGTTCTTTT CCTCGACAGG GTGGAGACGG CGCTGCGCCG CGCCCGTCGC
CATGAGACCT ACCATTTCGC CGTACTCTTT CTCGACCTCG ACAGGTTCAA GGTCGTCAAC
GACAGTCTCG GTCACAAGGC GGGTGACGAG CTGTTGCGCC AGTTCGCAAG GCGTCTGGAA
CCCTGCCTGC GCGAGGTGGA CACCATGGCG CGCTTCGGGG GAGACGAGTT CGCCATCCTG
CTGGACGACA TGAGCGACGT TGACGAGTCG GTGAATATCA TCGAGCGTCT TCAGGCTGCG
TTGCGGCAGC CGTTCCTCGT GCAGGGGATG GAGGTCTACA CCGGTGCCAG TATCGGGGCT
GTGCTCCGCG CCCGCGACTA CACGCAGGCG GAAGATATCC TGCGGGATGC CGATATCGCC
ATGTATCGCG CCAAGGATAG CGGCAAGGGC CGGTTCGTGG TGTTCGAGTC GAGTGCTGCT
CCCGGGGCAC AGGACATCCT GCGTCGCGAG AACGAATTGC GCAGGGCGCT CGATGGTGAC
GAGATCGAGC TGTACTTCCA GCCCATAGTG GCCTTGCGGA CGGGACGCAT CACCGGTCTC
GAGGCTCTCG TGCGCTGGCA GCATCCCGAA CAGGGGCTGC TGGCTCCGGG CACGTTCATC
CCGCTGGCGG AAGAGTCCAA TCTCATCTGC GACCTCGACA TGCACGTCTT CCGCAAGGGA
TGCCTTGCCG TTGTGGCGCT GCAGGAGGCC TTCGAGGGGC CGCTGGCAGT CAACATCAAT
ATCTCGGCCC GCAGCTTCCG CAGGCTACGC ATGGTGCAGG ACATCACGGA CATCCTGCGC
GAGACGGGAT GCCCGCCACA GATGGTGAAG CTCGAGATCA CCGAGAACCT GCTGCTGACA
GGGCTTGAAG TGACGGACAA GCTCTGGCGT CTCAAGGACC TTGGACTGTC CCTCGTGCTT
GACGATTTCG GTACGGGCTA TTCTTCGTTG AACTACCTGC GCCAGTTCCC CATGGATATC
CTCAAGATAG ACAGGTCGTT CATCAGTCGC GTGCACGAGG AGAGGGCGGC GAGGGGTATC
GTTGAGTCCA TCGCCAACCT CGGGCGCACG TTGGGTCTCG GAGTCGTCGC CGAAGGCATC
GAGGTGTCGG AACAGGCAGA GATTCTGCTG GAAGTGGGCT GCCCGCACGG GCAGGGCTAT
TTCTATTCCC GCCCTCAACC GTTCGACCGG ATGCTTCGCA CGCTCGAACG ACGTCGCCCG
TTGCCGTTGT CAGCAGGATA G
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| Protein sequence | MSTLPDSRES RDMPSGKEGG LPGSAHEAPI VAGGDVSRSS DSTGLEYASA AAPVGDLLRA
VRGGMHGVTA SRGGVSGANA SVGVAVFDGA GNLLEMNPQL ARLLGCGDCP PPSLFSSGFV
GLEGTTEVLS LFMRIAAGKV PGGMCRKRFC GEGGKTFTAR VTLYAEHDIS GRVARIVKLV
QPEAGEDASV PGADVADKVR AALDLIAYAR LNERDLPSLV ARFHRILRSL MPFEHCYVAL
CDGPGGMVSY PYYRDIGVVS RDARAFGDGI SEYIYTNGAA LVLDAQGIES LERAGRFRLR
CARPRHWIGV PLRTHGGEVI GVFAGKSYRE GDAYTVEDRL LLELVSGHVA GAIIERRKAF
ALQESEARFR AIFEHSAAGI CLVGRDGLLM DANPAFEELL GLTRAEVVGC RFDAFLPVKA
ASELDSTCRS SFAEGRDTVS LRLPFLRVDG EQRWGRQIVT AVRDVAGDVA FVLAQVEDIT
EQQQTEARLT RMAFHDALTG LPNRVLFLDR VETALRRARR HETYHFAVLF LDLDRFKVVN
DSLGHKAGDE LLRQFARRLE PCLREVDTMA RFGGDEFAIL LDDMSDVDES VNIIERLQAA
LRQPFLVQGM EVYTGASIGA VLRARDYTQA EDILRDADIA MYRAKDSGKG RFVVFESSAA
PGAQDILRRE NELRRALDGD EIELYFQPIV ALRTGRITGL EALVRWQHPE QGLLAPGTFI
PLAEESNLIC DLDMHVFRKG CLAVVALQEA FEGPLAVNIN ISARSFRRLR MVQDITDILR
ETGCPPQMVK LEITENLLLT GLEVTDKLWR LKDLGLSLVL DDFGTGYSSL NYLRQFPMDI
LKIDRSFISR VHEERAARGI VESIANLGRT LGLGVVAEGI EVSEQAEILL EVGCPHGQGY
FYSRPQPFDR MLRTLERRRP LPLSAG
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