Gene Dvul_1867 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_1867 
Symbol 
ID4662759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand
Start bp2176130 
End bp2178910 
Gene Length2781 bp 
Protein Length926 aa 
Translation table11 
GC content64% 
IMG OID639820108 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_967311 
Protein GI120602911 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.233383 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACTC TGCCCGATAG CCGCGAATCC CGTGATATGC CTTCCGGTAA GGAAGGCGGT 
CTCCCCGGGA GTGCGCACGA AGCCCCGATT GTTGCCGGGG GGGATGTCTC GCGTTCCTCC
GACAGCACCG GCCTTGAATA TGCTTCGGCT GCAGCACCCG TGGGCGACTT GCTGCGGGCC
GTACGTGGCG GCATGCATGG TGTGACGGCC TCCCGTGGGG GTGTGTCCGG TGCCAATGCC
AGTGTGGGGG TGGCGGTTTT CGACGGTGCC GGCAACCTGC TGGAGATGAA CCCGCAGCTG
GCACGCCTTC TGGGGTGCGG TGACTGCCCG CCGCCTTCCC TCTTCTCTTC GGGTTTCGTC
GGCCTTGAAG GCACGACAGA GGTCCTTTCG CTGTTCATGC GCATCGCAGC CGGAAAGGTT
CCGGGGGGCA TGTGCCGCAA GCGGTTTTGC GGCGAGGGCG GCAAAACGTT CACTGCGCGG
GTGACTCTCT ACGCCGAACA TGACATCTCT GGGCGCGTCG CACGCATCGT CAAACTGGTG
CAGCCCGAGG CGGGAGAGGA TGCCTCTGTT CCGGGGGCGG ACGTGGCCGA CAAGGTGCGC
GCCGCACTCG ACCTCATCGC CTACGCGCGT CTCAATGAAC GTGACCTGCC TTCCCTGGTG
GCGCGCTTCC ATCGCATACT CCGGTCGCTG ATGCCGTTCG AACATTGCTA TGTCGCACTC
TGCGACGGGC CGGGCGGCAT GGTGAGTTAT CCCTACTATC GCGACATCGG TGTCGTCAGC
CGCGATGCCC GCGCCTTCGG CGATGGCATC AGCGAGTACA TCTACACGAA CGGTGCTGCG
CTGGTCCTTG ATGCGCAGGG GATAGAGTCG CTTGAGCGCG CGGGGCGCTT CCGCCTGCGT
TGTGCGCGCC CTCGGCACTG GATAGGCGTT CCGCTGCGGA CGCACGGGGG CGAGGTCATC
GGTGTCTTCG CGGGCAAGAG TTATCGTGAG GGCGATGCCT ACACGGTCGA AGACCGGTTG
CTTCTCGAAC TGGTCTCGGG ACATGTGGCG GGGGCCATCA TCGAGCGGCG CAAGGCGTTT
GCGCTACAGG AAAGCGAAGC ACGGTTCAGG GCCATCTTCG AGCATTCAGC CGCCGGCATC
TGCCTTGTAG GGCGTGACGG CCTGCTGATG GATGCCAACC CTGCCTTCGA GGAACTGCTC
GGGCTGACAC GTGCCGAAGT GGTGGGGTGC CGCTTTGACG CCTTCCTGCC CGTGAAGGCC
GCATCCGAGC TCGATTCCAC CTGCCGCAGC TCTTTTGCCG AGGGGCGCGA CACCGTGTCA
CTGCGGCTGC CGTTCCTGCG GGTGGATGGC GAGCAGCGTT GGGGCAGACA GATCGTCACC
GCCGTGCGCG ACGTGGCGGG TGATGTGGCC TTCGTGCTTG CGCAGGTCGA GGACATCACA
GAGCAGCAGC AGACCGAGGC GCGGCTGACA CGCATGGCCT TCCATGATGC GCTCACCGGC
TTGCCCAACC GCGTTCTTTT CCTCGACAGG GTGGAGACGG CGCTGCGCCG CGCCCGTCGC
CATGAGACCT ACCATTTCGC CGTACTCTTT CTCGACCTCG ACAGGTTCAA GGTCGTCAAC
GACAGTCTCG GTCACAAGGC GGGTGACGAG CTGTTGCGCC AGTTCGCAAG GCGTCTGGAA
CCCTGCCTGC GCGAGGTGGA CACCATGGCG CGCTTCGGGG GAGACGAGTT CGCCATCCTG
CTGGACGACA TGAGCGACGT TGACGAGTCG GTGAATATCA TCGAGCGTCT TCAGGCTGCG
TTGCGGCAGC CGTTCCTCGT GCAGGGGATG GAGGTCTACA CCGGTGCCAG TATCGGGGCT
GTGCTCCGCG CCCGCGACTA CACGCAGGCG GAAGATATCC TGCGGGATGC CGATATCGCC
ATGTATCGCG CCAAGGATAG CGGCAAGGGC CGGTTCGTGG TGTTCGAGTC GAGTGCTGCT
CCCGGGGCAC AGGACATCCT GCGTCGCGAG AACGAATTGC GCAGGGCGCT CGATGGTGAC
GAGATCGAGC TGTACTTCCA GCCCATAGTG GCCTTGCGGA CGGGACGCAT CACCGGTCTC
GAGGCTCTCG TGCGCTGGCA GCATCCCGAA CAGGGGCTGC TGGCTCCGGG CACGTTCATC
CCGCTGGCGG AAGAGTCCAA TCTCATCTGC GACCTCGACA TGCACGTCTT CCGCAAGGGA
TGCCTTGCCG TTGTGGCGCT GCAGGAGGCC TTCGAGGGGC CGCTGGCAGT CAACATCAAT
ATCTCGGCCC GCAGCTTCCG CAGGCTACGC ATGGTGCAGG ACATCACGGA CATCCTGCGC
GAGACGGGAT GCCCGCCACA GATGGTGAAG CTCGAGATCA CCGAGAACCT GCTGCTGACA
GGGCTTGAAG TGACGGACAA GCTCTGGCGT CTCAAGGACC TTGGACTGTC CCTCGTGCTT
GACGATTTCG GTACGGGCTA TTCTTCGTTG AACTACCTGC GCCAGTTCCC CATGGATATC
CTCAAGATAG ACAGGTCGTT CATCAGTCGC GTGCACGAGG AGAGGGCGGC GAGGGGTATC
GTTGAGTCCA TCGCCAACCT CGGGCGCACG TTGGGTCTCG GAGTCGTCGC CGAAGGCATC
GAGGTGTCGG AACAGGCAGA GATTCTGCTG GAAGTGGGCT GCCCGCACGG GCAGGGCTAT
TTCTATTCCC GCCCTCAACC GTTCGACCGG ATGCTTCGCA CGCTCGAACG ACGTCGCCCG
TTGCCGTTGT CAGCAGGATA G
 
Protein sequence
MSTLPDSRES RDMPSGKEGG LPGSAHEAPI VAGGDVSRSS DSTGLEYASA AAPVGDLLRA 
VRGGMHGVTA SRGGVSGANA SVGVAVFDGA GNLLEMNPQL ARLLGCGDCP PPSLFSSGFV
GLEGTTEVLS LFMRIAAGKV PGGMCRKRFC GEGGKTFTAR VTLYAEHDIS GRVARIVKLV
QPEAGEDASV PGADVADKVR AALDLIAYAR LNERDLPSLV ARFHRILRSL MPFEHCYVAL
CDGPGGMVSY PYYRDIGVVS RDARAFGDGI SEYIYTNGAA LVLDAQGIES LERAGRFRLR
CARPRHWIGV PLRTHGGEVI GVFAGKSYRE GDAYTVEDRL LLELVSGHVA GAIIERRKAF
ALQESEARFR AIFEHSAAGI CLVGRDGLLM DANPAFEELL GLTRAEVVGC RFDAFLPVKA
ASELDSTCRS SFAEGRDTVS LRLPFLRVDG EQRWGRQIVT AVRDVAGDVA FVLAQVEDIT
EQQQTEARLT RMAFHDALTG LPNRVLFLDR VETALRRARR HETYHFAVLF LDLDRFKVVN
DSLGHKAGDE LLRQFARRLE PCLREVDTMA RFGGDEFAIL LDDMSDVDES VNIIERLQAA
LRQPFLVQGM EVYTGASIGA VLRARDYTQA EDILRDADIA MYRAKDSGKG RFVVFESSAA
PGAQDILRRE NELRRALDGD EIELYFQPIV ALRTGRITGL EALVRWQHPE QGLLAPGTFI
PLAEESNLIC DLDMHVFRKG CLAVVALQEA FEGPLAVNIN ISARSFRRLR MVQDITDILR
ETGCPPQMVK LEITENLLLT GLEVTDKLWR LKDLGLSLVL DDFGTGYSSL NYLRQFPMDI
LKIDRSFISR VHEERAARGI VESIANLGRT LGLGVVAEGI EVSEQAEILL EVGCPHGQGY
FYSRPQPFDR MLRTLERRRP LPLSAG