| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1660 |
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| Symbol | |
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| ID | 4663847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | - |
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| Start bp | 1971939 |
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| End bp | 1974932 |
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| Gene Length | 2994 bp |
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| Protein Length | 997 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639819899 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_967104 |
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| Protein GI | 120602704 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.933156 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCGTT CGCGTCTCTT CAGGCGTACC CTTCTTGGTA TGCTCGTGCT TTTCGGCTTC
TATGCCTTGG CCGTTTCGGC GGGGTCCGAC ATCTTCACGC GCCGTCAGCT CATGCGCGAG
AGTGAGGCCA CGGCGCGGGC TGTCGCGCAG AGCATCGCCG GCAGCAGCAT GGACAGCCTC
TACGGCCTCG ACCCCATCAC CATACAGTCG CGCATCGACC AGTACCTGTC TGTTCCCGGT
GTCCGCTATG CCCTGGTGAC GGCTTCTTCG GGGGACATCG TCGCCCATAC CTTTGCACCG
GTCGTTCCGG AGGACGTCCG TGCACTTGCG CGCTCCCTGT CCGATGCCAG AAAGGCAGAC
TCCACATTCC AGCAATACGA CGTGGACCTC CCTGACGGTT CGGCGGCCCT GCACTGCGTC
ATGCCCGTGT ACGAGGGGCT TGGCGGGTAT GTGCATATCG GGATGGACCG TAGTTCCCTC
GACAGCCATG TGGGGCACGT GGTGCGCAGT CAGCAGATTC TTGCCCTCGT CTTCTTCTGC
GTCGCGGCGT TCGCCTCATG GTTCTTCCTC CAGTCCATAT CGCGTCCGCT TGCCGCCCTG
ACCGACTATG CCCGCAAGGT CGCGGCGCAC GAGTTTCCTG CGCCGGTCGA AGTGAAGAGT
CGCGATGAAA TCGGAACGCT GGCACGTGTG ATGGGGTTCA TGGCGGCTGA CCTTGCCCGC
TTCGTCGGCG GGCTTGAGGC GGAGGTCAAA CGGTCTACAG GTGAGTTGCG CACTGCCCTG
GGTGAGCTTT CGGCCATCGT CGGGGGTATG GGGGAGGGCT TGCTTGTCGT TTCCGCCGAA
GGGTTGGTGC TTCGTTCCAA TGAGGCGTTC GCTTCGTTGT TCTGCCTTGA ACCCTTCGGG
TGCCCGGTCG CGCTTGATGC CTTGTTGCCC CTGTCCGGAC AGGATGATTC GGGTTTGCGC
GGCGTGCTTG AAGATGCCTT GCAATCAATG GCCCGGGGCG AAGCCGCACG CCATTCCGGC
GAGTATCCGT TCATTTGTGG CGACGGTGTC CGGCGCTGGG TCGGGTGTAC CATAGAGCCT
GTGACCATCG GCGGAAAACC ATGCATCGTG TGTCTTGTGC AGGATGTCAC GGCCCGCAAC
GAGGCACAGC AGGCCCTTCG CGACGCCTAC GACAAGCTTG AGGCCGAGGT CGCCAGCCGC
ACCCGAGACC TTCGTCGGGC CAACGCGCAA CTGCTGCTCG AGAACGCCGA ACGCCGGAGC
GTGGAACAGG CGCTTCGCCG GGCCGAACAG CGATACCGGG GCATCTTCGA GAATGCCGTC
GAGGGTATTT TCCAGATTGC GCCGGACGGT ATGCTCCTTC GCGGCAACCC CGCCATGGCG
GAGATGTTCG GGTACTCCGA CATCGAGTCG TTGCGTGAGG TGGGCAGCAT GGCGGAGGCC
ATGTTCGCCG AGGCGACCTC CTCGGACGTG TTCTTTCACC AGCTAGAAAT GACGGGGAAC
GTGTCAGGGT TCGAATTCCG GGCCCGGCAT CGGGAAGACC GGGAGTTGTG GCTGAGAGTC
AATGCGCGCC GTGTGGCCGA CGCGCATGAT GCCACGTTGT TCTACGAAGG GTTTCTCACC
GATATCACCA TCAGCCATCG TTCACGCCAG CAACTGGCGC ATCAGGCGTA CCACGACCCT
CTCACCGGGC TTCCGAACCG GCTGCTTTTC CTCGACCATC TCCAGTTGGC CATGCAGCGG
GCGGCGCGAC GGGCAGACGC CATGTTCACC GTGCTGTATC TTGACCTCGA CAGATTCAAG
ATCATCAACG ACAGCCTGGG GCATGGCATC GGCGACGCCC TGTTGCGCGA GGTCGCCTGT
ACGTTGCGCC GCTGCGTCCG TGATGTGGAC ACGGTGGCCC GTTTCGGGGG CGATGAGTTC
GCCATCCTGC TCGAAGACAC GGGCAATTGC GCCGGGGCGG TGCGCATCGC GCGACGTATC
CGTGAAAGCC TCGCCCAGCC GGTGAACATC GCCGGACATG AGGTGTTCAC CACGGCCAGC
ATCGGCATCG TGTTGCAGAC AAGGGACTAC CTCACGCCCG AAGACATCCT GCGCGATGCC
GACACGGCCA TGTACCGGGC AAAGGAGATG GGCAAGTCGC GCTTCAAGGT GTTCAATGCC
CGTATGCGTG AAGATACGCT CCGTCTCATG GCGCTGGAGA CCGATTTGCG TTTCGCTGTC
GAACGGGGTG AATTGTCGCT CCGTTATCAT CCCATCGTCG ACCTCGAAGA CGGTAGCCTG
CACGGCTTTG AATCGTTGCT TCGATGGCGT CGGGGCAACG AGGACGTTTC TCCGGCGGAG
TTCATTCCGG TCGCGGAGGA TGCGGGGCTC ATCGCAGATA TCGGAGCTTT CGTCATCGAG
GACGTTTGCA GGCAGGTAGC GGCGTGGCAG GACACGGCGT GCGATTGCGG CATCGTCCAC
GTCAACATCT CGGGGCGCCA GCTCATGCGT CCGGGCTTCG CCCAGATGGT CGACGAAATC
CTGCGGCGCC ATGGCATCGC CGGGTCGTGC CTGCGGTTCG AGGTCACTGA GAGCGTTCTC
GTGCGACATG GCACACTGGC TGTCTCCGTC ATGCACCAGT TGCGCGAACT CGGTATACGA
CTGTGTCTGG ACGACTTCGG TACCGGCTAT TCCTCGCTGG GGTACCTGCG TCGCCTGCCC
GTGGAGAGTC TCAAGATAGA CCGGAGTTTC GTCTGGGGCA TGGAGAAGGA CGAGGCTGGA
AGGGCCCTTG TCCGGGGTAT CCTCACGTTG GGGCTGCATC TCGGACTCGA GGTCGTGGCG
GAAGGCGTGG AAACCGAAGA ACAGGCCGTG CTCCTGCGCG ATATGGGCTG CCGATACGGG
CAGGGCTTCC TTTACGCGAA GCCTCTCCTG TCTGAACGGG TACCCCCTTT CGTTTGTCTC
AGAGAGGCAG CCGTCGCGGG TTATGGCGTT TCCGTCTCGA CTGGGGTAGC CTAG
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| Protein sequence | MIRSRLFRRT LLGMLVLFGF YALAVSAGSD IFTRRQLMRE SEATARAVAQ SIAGSSMDSL
YGLDPITIQS RIDQYLSVPG VRYALVTASS GDIVAHTFAP VVPEDVRALA RSLSDARKAD
STFQQYDVDL PDGSAALHCV MPVYEGLGGY VHIGMDRSSL DSHVGHVVRS QQILALVFFC
VAAFASWFFL QSISRPLAAL TDYARKVAAH EFPAPVEVKS RDEIGTLARV MGFMAADLAR
FVGGLEAEVK RSTGELRTAL GELSAIVGGM GEGLLVVSAE GLVLRSNEAF ASLFCLEPFG
CPVALDALLP LSGQDDSGLR GVLEDALQSM ARGEAARHSG EYPFICGDGV RRWVGCTIEP
VTIGGKPCIV CLVQDVTARN EAQQALRDAY DKLEAEVASR TRDLRRANAQ LLLENAERRS
VEQALRRAEQ RYRGIFENAV EGIFQIAPDG MLLRGNPAMA EMFGYSDIES LREVGSMAEA
MFAEATSSDV FFHQLEMTGN VSGFEFRARH REDRELWLRV NARRVADAHD ATLFYEGFLT
DITISHRSRQ QLAHQAYHDP LTGLPNRLLF LDHLQLAMQR AARRADAMFT VLYLDLDRFK
IINDSLGHGI GDALLREVAC TLRRCVRDVD TVARFGGDEF AILLEDTGNC AGAVRIARRI
RESLAQPVNI AGHEVFTTAS IGIVLQTRDY LTPEDILRDA DTAMYRAKEM GKSRFKVFNA
RMREDTLRLM ALETDLRFAV ERGELSLRYH PIVDLEDGSL HGFESLLRWR RGNEDVSPAE
FIPVAEDAGL IADIGAFVIE DVCRQVAAWQ DTACDCGIVH VNISGRQLMR PGFAQMVDEI
LRRHGIAGSC LRFEVTESVL VRHGTLAVSV MHQLRELGIR LCLDDFGTGY SSLGYLRRLP
VESLKIDRSF VWGMEKDEAG RALVRGILTL GLHLGLEVVA EGVETEEQAV LLRDMGCRYG
QGFLYAKPLL SERVPPFVCL REAAVAGYGV SVSTGVA
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