Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dvul_1660 |
Symbol | |
ID | 4663847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris DP4 |
Kingdom | Bacteria |
Replicon accession | NC_008751 |
Strand | - |
Start bp | 1971939 |
End bp | 1974932 |
Gene Length | 2994 bp |
Protein Length | 997 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639819899 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_967104 |
Protein GI | 120602704 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.933156 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCGTT CGCGTCTCTT CAGGCGTACC CTTCTTGGTA TGCTCGTGCT TTTCGGCTTC TATGCCTTGG CCGTTTCGGC GGGGTCCGAC ATCTTCACGC GCCGTCAGCT CATGCGCGAG AGTGAGGCCA CGGCGCGGGC TGTCGCGCAG AGCATCGCCG GCAGCAGCAT GGACAGCCTC TACGGCCTCG ACCCCATCAC CATACAGTCG CGCATCGACC AGTACCTGTC TGTTCCCGGT GTCCGCTATG CCCTGGTGAC GGCTTCTTCG GGGGACATCG TCGCCCATAC CTTTGCACCG GTCGTTCCGG AGGACGTCCG TGCACTTGCG CGCTCCCTGT CCGATGCCAG AAAGGCAGAC TCCACATTCC AGCAATACGA CGTGGACCTC CCTGACGGTT CGGCGGCCCT GCACTGCGTC ATGCCCGTGT ACGAGGGGCT TGGCGGGTAT GTGCATATCG GGATGGACCG TAGTTCCCTC GACAGCCATG TGGGGCACGT GGTGCGCAGT CAGCAGATTC TTGCCCTCGT CTTCTTCTGC GTCGCGGCGT TCGCCTCATG GTTCTTCCTC CAGTCCATAT CGCGTCCGCT TGCCGCCCTG ACCGACTATG CCCGCAAGGT CGCGGCGCAC GAGTTTCCTG CGCCGGTCGA AGTGAAGAGT CGCGATGAAA TCGGAACGCT GGCACGTGTG ATGGGGTTCA TGGCGGCTGA CCTTGCCCGC TTCGTCGGCG GGCTTGAGGC GGAGGTCAAA CGGTCTACAG GTGAGTTGCG CACTGCCCTG GGTGAGCTTT CGGCCATCGT CGGGGGTATG GGGGAGGGCT TGCTTGTCGT TTCCGCCGAA GGGTTGGTGC TTCGTTCCAA TGAGGCGTTC GCTTCGTTGT TCTGCCTTGA ACCCTTCGGG TGCCCGGTCG CGCTTGATGC CTTGTTGCCC CTGTCCGGAC AGGATGATTC GGGTTTGCGC GGCGTGCTTG AAGATGCCTT GCAATCAATG GCCCGGGGCG AAGCCGCACG CCATTCCGGC GAGTATCCGT TCATTTGTGG CGACGGTGTC CGGCGCTGGG TCGGGTGTAC CATAGAGCCT GTGACCATCG GCGGAAAACC ATGCATCGTG TGTCTTGTGC AGGATGTCAC GGCCCGCAAC GAGGCACAGC AGGCCCTTCG CGACGCCTAC GACAAGCTTG AGGCCGAGGT CGCCAGCCGC ACCCGAGACC TTCGTCGGGC CAACGCGCAA CTGCTGCTCG AGAACGCCGA ACGCCGGAGC GTGGAACAGG CGCTTCGCCG GGCCGAACAG CGATACCGGG GCATCTTCGA GAATGCCGTC GAGGGTATTT TCCAGATTGC GCCGGACGGT ATGCTCCTTC GCGGCAACCC CGCCATGGCG GAGATGTTCG GGTACTCCGA CATCGAGTCG TTGCGTGAGG TGGGCAGCAT GGCGGAGGCC ATGTTCGCCG AGGCGACCTC CTCGGACGTG TTCTTTCACC AGCTAGAAAT GACGGGGAAC GTGTCAGGGT TCGAATTCCG GGCCCGGCAT CGGGAAGACC GGGAGTTGTG GCTGAGAGTC AATGCGCGCC GTGTGGCCGA CGCGCATGAT GCCACGTTGT TCTACGAAGG GTTTCTCACC GATATCACCA TCAGCCATCG TTCACGCCAG CAACTGGCGC ATCAGGCGTA CCACGACCCT CTCACCGGGC TTCCGAACCG GCTGCTTTTC CTCGACCATC TCCAGTTGGC CATGCAGCGG GCGGCGCGAC GGGCAGACGC CATGTTCACC GTGCTGTATC TTGACCTCGA CAGATTCAAG ATCATCAACG ACAGCCTGGG GCATGGCATC GGCGACGCCC TGTTGCGCGA GGTCGCCTGT ACGTTGCGCC GCTGCGTCCG TGATGTGGAC ACGGTGGCCC GTTTCGGGGG CGATGAGTTC GCCATCCTGC TCGAAGACAC GGGCAATTGC GCCGGGGCGG TGCGCATCGC GCGACGTATC CGTGAAAGCC TCGCCCAGCC GGTGAACATC GCCGGACATG AGGTGTTCAC CACGGCCAGC ATCGGCATCG TGTTGCAGAC AAGGGACTAC CTCACGCCCG AAGACATCCT GCGCGATGCC GACACGGCCA TGTACCGGGC AAAGGAGATG GGCAAGTCGC GCTTCAAGGT GTTCAATGCC CGTATGCGTG AAGATACGCT CCGTCTCATG GCGCTGGAGA CCGATTTGCG TTTCGCTGTC GAACGGGGTG AATTGTCGCT CCGTTATCAT CCCATCGTCG ACCTCGAAGA CGGTAGCCTG CACGGCTTTG AATCGTTGCT TCGATGGCGT CGGGGCAACG AGGACGTTTC TCCGGCGGAG TTCATTCCGG TCGCGGAGGA TGCGGGGCTC ATCGCAGATA TCGGAGCTTT CGTCATCGAG GACGTTTGCA GGCAGGTAGC GGCGTGGCAG GACACGGCGT GCGATTGCGG CATCGTCCAC GTCAACATCT CGGGGCGCCA GCTCATGCGT CCGGGCTTCG CCCAGATGGT CGACGAAATC CTGCGGCGCC ATGGCATCGC CGGGTCGTGC CTGCGGTTCG AGGTCACTGA GAGCGTTCTC GTGCGACATG GCACACTGGC TGTCTCCGTC ATGCACCAGT TGCGCGAACT CGGTATACGA CTGTGTCTGG ACGACTTCGG TACCGGCTAT TCCTCGCTGG GGTACCTGCG TCGCCTGCCC GTGGAGAGTC TCAAGATAGA CCGGAGTTTC GTCTGGGGCA TGGAGAAGGA CGAGGCTGGA AGGGCCCTTG TCCGGGGTAT CCTCACGTTG GGGCTGCATC TCGGACTCGA GGTCGTGGCG GAAGGCGTGG AAACCGAAGA ACAGGCCGTG CTCCTGCGCG ATATGGGCTG CCGATACGGG CAGGGCTTCC TTTACGCGAA GCCTCTCCTG TCTGAACGGG TACCCCCTTT CGTTTGTCTC AGAGAGGCAG CCGTCGCGGG TTATGGCGTT TCCGTCTCGA CTGGGGTAGC CTAG
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Protein sequence | MIRSRLFRRT LLGMLVLFGF YALAVSAGSD IFTRRQLMRE SEATARAVAQ SIAGSSMDSL YGLDPITIQS RIDQYLSVPG VRYALVTASS GDIVAHTFAP VVPEDVRALA RSLSDARKAD STFQQYDVDL PDGSAALHCV MPVYEGLGGY VHIGMDRSSL DSHVGHVVRS QQILALVFFC VAAFASWFFL QSISRPLAAL TDYARKVAAH EFPAPVEVKS RDEIGTLARV MGFMAADLAR FVGGLEAEVK RSTGELRTAL GELSAIVGGM GEGLLVVSAE GLVLRSNEAF ASLFCLEPFG CPVALDALLP LSGQDDSGLR GVLEDALQSM ARGEAARHSG EYPFICGDGV RRWVGCTIEP VTIGGKPCIV CLVQDVTARN EAQQALRDAY DKLEAEVASR TRDLRRANAQ LLLENAERRS VEQALRRAEQ RYRGIFENAV EGIFQIAPDG MLLRGNPAMA EMFGYSDIES LREVGSMAEA MFAEATSSDV FFHQLEMTGN VSGFEFRARH REDRELWLRV NARRVADAHD ATLFYEGFLT DITISHRSRQ QLAHQAYHDP LTGLPNRLLF LDHLQLAMQR AARRADAMFT VLYLDLDRFK IINDSLGHGI GDALLREVAC TLRRCVRDVD TVARFGGDEF AILLEDTGNC AGAVRIARRI RESLAQPVNI AGHEVFTTAS IGIVLQTRDY LTPEDILRDA DTAMYRAKEM GKSRFKVFNA RMREDTLRLM ALETDLRFAV ERGELSLRYH PIVDLEDGSL HGFESLLRWR RGNEDVSPAE FIPVAEDAGL IADIGAFVIE DVCRQVAAWQ DTACDCGIVH VNISGRQLMR PGFAQMVDEI LRRHGIAGSC LRFEVTESVL VRHGTLAVSV MHQLRELGIR LCLDDFGTGY SSLGYLRRLP VESLKIDRSF VWGMEKDEAG RALVRGILTL GLHLGLEVVA EGVETEEQAV LLRDMGCRYG QGFLYAKPLL SERVPPFVCL REAAVAGYGV SVSTGVA
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