| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1162 |
|---|
| Symbol | |
|---|
| ID | 4663298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | + |
|---|
| Start bp | 1418017 |
|---|
| End bp | 1419138 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639819392 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_966609 |
|---|
| Protein GI | 120602209 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.332491 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCCA TGAACGCTTC AGGTGTGCCG CGCCAGTCCC GCCCGCCCCG CGAAGGGATG
CTCCTTTCGT CGGATGAAGC CTTCGTCGAG ACCGTGACCT CCCTGTGGCC CGAGGATGTC
ATGCATTGGC AGGTGCTGCG TTCGGGTCGT GCCGCGCTGG ACATCATGTT CGTCACCCCT
CCCGACCTGC TGGTCGTGGA CATGCGTCTT GCCGACCTGC CGGGGGATGC GGTGCTGCGC
ATTCTCAAGA GCGAGAACGT GTACCGTCAG ATATGCGCGG TGCTGTGCAT GGATGAGGCG
ACATTGCATG GCGGCATGGA CTGGGCGACC ACCGAGGCCG ACGACTTCGT GCTGCTGCCT
GCCACCGTGG TGGAACTGCG GGCCCGGCTG GAATTGGCCA TGTTGCGCGC CACGCGAACG
CTCGACGCCA ATCCGCTCAC GCATCTTCCG GGCAACACGT CCATCCTGCT CGACATCCAG
ACACGCATCG ACAGGGGCGA AGACTTCGGC CTCGGCTACG CCGATTTGGA CAACTTCAAG
GCGTTCAACG ACAAGTACGG CTTTTCGCGC GGCGACGAGG CGCTGATGAT GACGGCGCGT
ATCATCGTCA ACACCGTCCG TGCCGTGGCA TCGGGCAGTT CTTCGTTCGT GGGGCATGTG
GGCGGTGACG ACTTCGTCTT CATGCTGCCC GCGGCGTTGA TGGAGTCCGC CTGTCGCACC
ATCGTGTCAC GCTTCGACGC CATCGTCCCC AGCTTCTACG ATGATGACGA CCGCGCACGA
GGTTGTATCG TCTCCACGGA TAGGCAGGGC GACGTGCGCA CCTTCCCTCT CATGGCCATC
TCCATCGCCG TGGTGTTCAA TCATGAAGGC TGCCTGCAGC ATGCGGGGGA AGCCTCGCAT
CGTGCCGGTC AGATGAAGAA GAAGGCCAAA GCCATGCCCG GCAGCAGCTA TGCTCTCGAC
AGGCGTTGCT ATGGCGACGT CTCGTCCGCT GACGGCACGG CGAAAGGCGT GCCGCCGACC
ATACCCGCAC AACGCGACAT GTACGACGAC AGTGACGGGA TGGGCGATGA GGTCGATGGG
GTCGACGGAG GCGGCAATCG CCACGGCGGT GCGCATGGCT AA
|
|---|
| Protein sequence | MDAMNASGVP RQSRPPREGM LLSSDEAFVE TVTSLWPEDV MHWQVLRSGR AALDIMFVTP
PDLLVVDMRL ADLPGDAVLR ILKSENVYRQ ICAVLCMDEA TLHGGMDWAT TEADDFVLLP
ATVVELRARL ELAMLRATRT LDANPLTHLP GNTSILLDIQ TRIDRGEDFG LGYADLDNFK
AFNDKYGFSR GDEALMMTAR IIVNTVRAVA SGSSSFVGHV GGDDFVFMLP AALMESACRT
IVSRFDAIVP SFYDDDDRAR GCIVSTDRQG DVRTFPLMAI SIAVVFNHEG CLQHAGEASH
RAGQMKKKAK AMPGSSYALD RRCYGDVSSA DGTAKGVPPT IPAQRDMYDD SDGMGDEVDG
VDGGGNRHGG AHG
|
|---|
| |