| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1112 |
|---|
| Symbol | |
|---|
| ID | 4662742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 1351441 |
|---|
| End bp | 1352895 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639819341 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_966559 |
|---|
| Protein GI | 120602159 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.48513 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.168783 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCC GCACCGCACC ATCGGCATAC GACGCATCCA CACTCCTTTT CACCCTGCTG
TGCACCATCG CCCTGTCCTG CGCCGCGCTG ACGGTACCAA CGTTCTGCGG TGCCGCCTCC
TCCGAGTTGC AGGTCGCGAC GGGCAAGTCC TCTGTCGTCT CCACGTCACG CCCGGTGGGT
CGTCTCGCCA TCGCGGACGA AGCCATCGCG GGTGTCGTCG TCCTTTCACC GCAGCAGGTC
TACGTGACCG GCAAGAAAGC TGGCACGACC ACGCTGACCC TGTGGGACGG CGGTGGCGCG
GTGATTGGCG TGTACGATGT GCAGGTCACG CCCGACATCG CCCAGCTCAA GGAGATGCTG
CACCGCGTAC TGCCCGGCGA GAACGACATC ATGGTCATGG GCGTCAACGA CACAGTGACA
CTCGCAGGCA CGGTGCGAAG CGCGGCAAGC ATGACCACCG CCATGGACAT GGCGCGCCTC
TACGCTCCCG ACAAGGTGAC CAACCTCATG CAGGTCGGCG GCGTGCATCA GGTGATGCTG
GAGGTGAAGG TGGCCGAGAT GCGACGTAAC GTCATGGAAC GTCTCGGCAT CGACCTCACC
TACGCATGGC GTGGCGACTT CATCTTCGGG ATGCTCAACC AACTTTTCAC CCTCGACAGC
CAGAAGGGTG TCGTGGACGC TGGCCCCAGC GGGGCGGTGC TCAGCCCCAA CGTGAACGGC
GCCTTCCGCA TCACGTCCGG ACAGGTGAGC ATCATGGGAT TTCTTGACGT GCTCAAACAG
AACGGACTGG TGAAGGTCCT CGCCGAACCC ACCCTCGTAT GCCGCAGCGG CGAGAAGGCC
GAATTCCTCG CCGGGGGCGA GATTCCCATT CCCGTACCGC AAGGGCTCGG CACCGTTGCC
ATCGAATACA AGGAGTTCGG CGTCACCCTT CAATTCCTGC CCACGGTGGT GGGGGACGGT
CGCATCAGCA TGAAGGTGGC CCCGGAAGTC TCTGAGCTCG ATTACACCAA CGTGGTGCAG
ATTCAGGGCT TCACCATTCC CGCCATCACC AGCCGACGGG CGTCGACCAC CGTCGAACTG
GCCGACGGGC AGAGCTTCGC CATCGCGGGA CTGCTGCGCG ACGACGTGCG GCAGGCGGTG
AACAAGTACC CGGTACTGGG CGACATGCCC GTACTGGGGA CGCTCTTCCG TTCCAGCAAC
TGGCAGAAGA ACGAGACGGA ACTTGTCATC ATCGTCACGC CGCATCTGGC CAAACCGCTT
GAAGCGAACG CCACACGCCT GCCCACGGAC GCCTATCGCG AGCCTTCCGC CTTCGAGTAC
TTCATCCTCG GCAGGATGGA AGGAAGCAGA CGTGCGGATG CGACAGCCGC AGCGGCCCGC
ACTTACGGCA CGACGGGCGC AGGCGCGCCC TCGGGAATGG AAGGCGCTTT CGGCCATATG
CTGCCAGCCC GCTAG
|
|---|
| Protein sequence | MTSRTAPSAY DASTLLFTLL CTIALSCAAL TVPTFCGAAS SELQVATGKS SVVSTSRPVG
RLAIADEAIA GVVVLSPQQV YVTGKKAGTT TLTLWDGGGA VIGVYDVQVT PDIAQLKEML
HRVLPGENDI MVMGVNDTVT LAGTVRSAAS MTTAMDMARL YAPDKVTNLM QVGGVHQVML
EVKVAEMRRN VMERLGIDLT YAWRGDFIFG MLNQLFTLDS QKGVVDAGPS GAVLSPNVNG
AFRITSGQVS IMGFLDVLKQ NGLVKVLAEP TLVCRSGEKA EFLAGGEIPI PVPQGLGTVA
IEYKEFGVTL QFLPTVVGDG RISMKVAPEV SELDYTNVVQ IQGFTIPAIT SRRASTTVEL
ADGQSFAIAG LLRDDVRQAV NKYPVLGDMP VLGTLFRSSN WQKNETELVI IVTPHLAKPL
EANATRLPTD AYREPSAFEY FILGRMEGSR RADATAAAAR TYGTTGAGAP SGMEGAFGHM
LPAR
|
|---|
| |