Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dvul_1109 |
Symbol | |
ID | 4662534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris DP4 |
Kingdom | Bacteria |
Replicon accession | NC_008751 |
Strand | - |
Start bp | 1347971 |
End bp | 1349797 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639819338 |
Product | type II secretion system protein E |
Protein accession | YP_966556 |
Protein GI | 120602156 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.280352 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0921606 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACTCG CCGAACGCCT CATGCGCGCG ACACGACGCC AGCAGGAAAC GGACGACGTA CCCGCCGCCC CGGTTCATGC GAGACGGGCC ACCGACCGCA TCGCCATGCC CGACACCCTG CGTGGTGACA CCGGGACACA CGGGCCCGAG AACGCCCCTT CTTCGCACCT CGACGTCACC ACGGCATCGG CCGGGCAACC GGACACGCAC AGCCAGACCG GCATGCCGTA CGATGTGGCG GTCGATGGCC TGCACGTCCG GCCTCCGCAA GACGGCCCTG CATCCGGACT TTTCCAGACG ACCAGCGACC AGCCCCCCAC CATTGCGGAC GGCGAGAACG ACGAGAACCC GATTCTGCCC CCTGCGGCCA CCACGGCGGC ACCGCGACGC CCTGTGGTCG CGCCGTCGTC ATCAAGGCGC ACGGACGACG CCACCGTGTC CCCCGCCGCT GCCGAAACAC AGGCAACCGC CCCGGCACAG GCCGAGCAAC CCCTGCGGGC GGCCCGCAGC ACCCCCCGGG CCGCGGAACA GGTCGTGGAC GTGAGCAAGC TCACCCTGCA CGGTGACCAC TATTACGAAA TCAAGGAACA TCTGCTCGAC CGACTGCTTG AGCTTCTCGA CCTCGCCGCC GTGGAGTCGC TTCCCCCCGA ACGACTTGGC GACGAGATTG GCCGCCTCGT CGAGAGGCTC ATGCGCGACG AGTTCAGGCA AGCCCCCCTC AACGCCAGTG AACGCCGCCA GATAACCGGT GACATCCGCG ACGAGATCCT CGGCCTCGGC CCGCTGGAAC CGCTGCTGCA CGACCCCACC GTCAACGACA TCCTCGTCAA CAACTACAGG CAAATCTACG TCGAACGCCG CGGCAAGCTC ATCAAGGTCA ACACGCGCTT CCAGGACGAC GACCACCTGC GCAAGATCAT CGACCGCATC GTCTCGCGCA TAGGCCGCCG AGTGGACGAA TCGTCGCCCA TGGTCGACGC CCGCCTTGCC GACGGGTCGC GCGTCAACGC CATCATCCCG CCTCTGGCGC TCGACGGACC CAGCCTGTCC ATCCGCCGCT TCTCGAAGGA CCCTCTGGAG TTGCACGACC TCATCGGCTT CGGCGCCCTG ACGCCGGAGA TGGGCGAAGT GCTGCAGGGC ATCGTCAAGG CGCGGCTGAA CATCATCGTC TCGGGCGGAA CAGGGTCGGG CAAGACCACC ATGCTCAACT GCCTTTCGCG TTTCGTGCCG CACGACGAAC GCATCGTGAC CATCGAGGAC GCCGCAGAAC TCCAGCTCAA ACAGGAGCAT GTGGTGCGCC TTGAGACACG GCCCGCCAAC ATCGAGGGAC ACGGCGAGGT CACGGCCCGC GACCTTGTGA AGAACTGCCT GCGTATGCGC CCCGACCGCA TCATCGTCGG CGAAGTCCGT AGCGGTGAAG TGCTCGACAT GCTGCAAGCC ATGAACACCG GTCACGACGG GTCGCTGACG ACCATCCACG CCAACACCCC GCGAGACTGC CTGATGCGCC TTGAGACCAT GGTCGCCATG GCAGGGCTGA ACATCAGCAC CCTTTCGCTC AAACGCTACA TATCCTCCGC CGTGGACGTG ATCATACAGG TCTCACGCCT CTCGGACGGT TCACGCAAGC TCACCAGCCT GATGGAACTG ACCGGCATGG AAGGCGAGGC CATCACCATG CAGGAAATCT ACAGCTTCGA GCAGACCGGA GTGGACGACA AGGGCAAGGT TCAGGGGCAC TTCCGCAGCG GCGGCATCAG GCCGAACTTC GCCCCGCGCC TAGCGGCCAT GGGCATCCAT CTCGGCGGCA GCCTCTTCGA CGTCTGA
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Protein sequence | MRLAERLMRA TRRQQETDDV PAAPVHARRA TDRIAMPDTL RGDTGTHGPE NAPSSHLDVT TASAGQPDTH SQTGMPYDVA VDGLHVRPPQ DGPASGLFQT TSDQPPTIAD GENDENPILP PAATTAAPRR PVVAPSSSRR TDDATVSPAA AETQATAPAQ AEQPLRAARS TPRAAEQVVD VSKLTLHGDH YYEIKEHLLD RLLELLDLAA VESLPPERLG DEIGRLVERL MRDEFRQAPL NASERRQITG DIRDEILGLG PLEPLLHDPT VNDILVNNYR QIYVERRGKL IKVNTRFQDD DHLRKIIDRI VSRIGRRVDE SSPMVDARLA DGSRVNAIIP PLALDGPSLS IRRFSKDPLE LHDLIGFGAL TPEMGEVLQG IVKARLNIIV SGGTGSGKTT MLNCLSRFVP HDERIVTIED AAELQLKQEH VVRLETRPAN IEGHGEVTAR DLVKNCLRMR PDRIIVGEVR SGEVLDMLQA MNTGHDGSLT TIHANTPRDC LMRLETMVAM AGLNISTLSL KRYISSAVDV IIQVSRLSDG SRKLTSLMEL TGMEGEAITM QEIYSFEQTG VDDKGKVQGH FRSGGIRPNF APRLAAMGIH LGGSLFDV
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