Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dvul_0978 |
Symbol | |
ID | 4662054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris DP4 |
Kingdom | Bacteria |
Replicon accession | NC_008751 |
Strand | - |
Start bp | 1203315 |
End bp | 1204853 |
Gene Length | 1539 bp |
Protein Length | 512 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639819201 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_966426 |
Protein GI | 120602026 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00370959 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGCCCC TAGACAGCAG CACTTTCGCC GACGTAAGCC GCGCAGCCGT TCTCACGCCG GCCATGCAGA CCATATGGGA AAGTATGGGG GTGGGGGTCG CCGTGGTGGA CGGAGAGGGC ATATGCCGCT TCATGAACAC CATCCAGCGG CGTGTGGACG GCTTCAGCCG CATTTCCGTG GTCGGGCGGC ACATCACGAG TCTCTATGTA CCGCACGAAC TCGAATGCAT CCCCACCATC GAGTGTCTCC GCAAGGGCGA ACCCATCCTG AAGAAGGCGT ACTGGTACAA GACCACCAAC AACTACCTTG CCAGCACAGT CACGGACTTC ATCCCCCTCT ATGACGCGGG ACGTAAGGAC GGGGTCATAG CCTTCACCAT CTGGACGGGA ACGACTGCCT TCGCCGAAGG GCGCAAACGC CAGCCCCGCC CGCCTCAGCC CAAAGGGGCG GCCTATGACT TCTATACGTT CGACAGCATC GTGGGACAGG ACGCCAACCT GCGCGAGGTC ATCGCCGAAG CGCGTACGGC AGCGGCAACC TCTTCGCCGG TGATGATCTG GGGGGAAAGC GGCACGGGCA AGGAGGTGTT TGCGCAAGCG ATCCACTCCG AGAGCGACCG CAGACAGCGA CCTTTCATTC CCGTGAACTG CGCCGCCATT CCCGAGAACC TGCTCGAAGG CATCCTCTTC GGCACGGTCA AGGGCGCGTA CACGGACGCC GCCGACAAGC CGGGCCTCTT CGAAGAGGCC GATGGCGGCA CCCTGCTCTT CGACGAGCTG AACTCCATGC CGCTGGGTTT GCAGGCCAAG CTGCTGCGCG TATTGCAGGA GAAGCGCGTG CGACGCCTCG GATCGCATAC GGAAGTCCCG GTAGACGTGC GCATCATGAG CATCCTCAAC GAAGAACCGT TGCAGGCCGT GGAACATGGC GTCCTGCGGC GCGACCTCTT CTACCGTCTC GCCGTGGTGG GCATCTCCGT GCCGCCCCTG CGCGAACGCA GGAACGACAT CCCGCTTCTC GCCCGCATGT TCATCGACCG TTCAGAATTG GCGACGCGCC CCGGTGGGCC GGGGACAGTC GGCGTCAACG ACGATGTACT GCACATGTTC ATGCACTACG ACTGGCCGGG CAACATCCGC GAACTCCTTC ACGTCGTGGA AGGCAGCCTG GCGCTTCTGG GTGATGGGCC GGAGATATGT CCCGCCTGTC TGCCGCGGCA CTTCCGCGAG GCCTGCCATG CGGCAGAGGT CGCTCCCCCA ACGGCTTCGG ACATCGTGAC GCAGGCCCCC ACCCTCCCCG CCCCCGCGGC CGCTGCCGTC GAGACCGGCG ATGCGGGCCT CTACTACGAC TACCGGAACA TCCGCAAAAG CCACGTCGTC CCGCTCAAGG GATGCCTGCA GAAATACGAG ACCCAGTGCA TCTCCAACGT GTTGCGGGTC ACGGGGGGGA ATGTGGCGAA GGCCGCCCGC ATCATGCAGG TCACTGGGGC GGGACTGCGT TACAAGATGA AGGCCCTCGA CATCTCGGAC GAGGATTGA
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Protein sequence | MMPLDSSTFA DVSRAAVLTP AMQTIWESMG VGVAVVDGEG ICRFMNTIQR RVDGFSRISV VGRHITSLYV PHELECIPTI ECLRKGEPIL KKAYWYKTTN NYLASTVTDF IPLYDAGRKD GVIAFTIWTG TTAFAEGRKR QPRPPQPKGA AYDFYTFDSI VGQDANLREV IAEARTAAAT SSPVMIWGES GTGKEVFAQA IHSESDRRQR PFIPVNCAAI PENLLEGILF GTVKGAYTDA ADKPGLFEEA DGGTLLFDEL NSMPLGLQAK LLRVLQEKRV RRLGSHTEVP VDVRIMSILN EEPLQAVEHG VLRRDLFYRL AVVGISVPPL RERRNDIPLL ARMFIDRSEL ATRPGGPGTV GVNDDVLHMF MHYDWPGNIR ELLHVVEGSL ALLGDGPEIC PACLPRHFRE ACHAAEVAPP TASDIVTQAP TLPAPAAAAV ETGDAGLYYD YRNIRKSHVV PLKGCLQKYE TQCISNVLRV TGGNVAKAAR IMQVTGAGLR YKMKALDISD ED
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