| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_0802 |
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| Symbol | |
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| ID | 4664157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | - |
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| Start bp | 985701 |
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| End bp | 989942 |
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| Gene Length | 4242 bp |
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| Protein Length | 1413 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639819023 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_966250 |
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| Protein GI | 120601850 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.564112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACGTT ACATCCGCGC CTTGCTGTGC TGTGTGGTCA TTGCGCTCAT CGTAGCGGGC
GCATCACCTA TCCGGGCTTC CGATGTAGGG TCTTTGCCAC TGCGCCTCGC CCTGCGGCCC
GACATGCCTC CATACCAGTT CTTCGATATG GAAGGACGCC CACAGGGGCT GGTCGTCACC
GTATGGGAAA GCTGGACGCG TGCCACGGGC ACTCCCGTGA TTTTTGTGCC TGTCACGGAG
AACGAGATTC CCGACGCCTT CGCCCGGTCG CGCATCGACG CCGTCGCCGC CCTGCCCGCC
CAGTTGCTGC CTCGTTTCGG TCTCGCCGAA GCGGCAGAGG TGGGCCATCT TTCCGTAGGC
ATCTTCTCGC ATACCGGGAC CTCTTCGCCT GACCCTGCCG ACCAGGGGCA GGGGAGTGTC
ACATCACCCG CCATCCCGGC CGGGATGGGA CTCGCCACCA TCCTGCAGGA TACGCTGCCG
GGAGTGAATC CCGTCGTCTT TCCCGACACC ACCAGTCTGC TTGCCGCCGC CCATGCCGGA
AACGTACGGC AGATTGCCCT TTACATGGCC CATGGTGACT ACCTGCGCAA ACACGGACGC
CTCGAAGGTT TCGATGCGGG CATCGCCGTA GCCTCAAGCC GGCTAGTGGC GGCCCTCCCC
GCTGCCGACA TCGCACGCAA GCAACGCATT CGACTCGGTT TCTCCCGTCT GGCGGATACC
GACCACCGCG ACCTTGAGGC CATGTGGCAC GGTGCGCAGA CCGCCTTTCC GTTCATGCGA
CCCCTCGTGC TTCTTGGCGC ACTGACATTC CTGCTTCTGG TCGTCGTACT CGGCCGCAAC
CTCGCGCTGC GCAGACGCAT GGAGAAGGAA CGTGCCGAAC GCCGCCGCAC CGAGAACATG
CTCGACGGCT TTCTTGAACG CCTGCCAGAC AACCACTTCA CCCTCAATGT GGATGGAACC
GGCGCTGTCG TCATGGCAAG CAACGGCACG GAGGACGTTC TTGGCGTCTC GCCGGATGAG
GCACCATCCA GACTACGGCA CCTGCTTCCC CCGACGAAGG ACGGCGCGTG GTCGCAGGCG
TCGTTCTCGA TTGAAGCGGC ACACGCTGAC GGTTCACTGC GCACGCTGGA CTGCCTTGCC
ACCACGCCCG ACGAAAGGGG ACACCGCCGT GTCCTCGTGT TCGACACCAC CCGCCGCAAC
CTCGAAAGAC AACGTGTCGA GGCCATACAT CACCGCTACA TGTCCATCCT CGACAATGCG
CCGGTGGGCA TCTTCCGCAT CATGCCCGAC GGTTCCATGG TGGGTGCCAA TCGCGAGATG
GCAAGGCTAT GGGGGTTCTC GTCGCCCGAA GAACTGCTCG CGTCGGAGGA GGCACGCCGC
CTCATCCTCT GCGACGACCC CAAGGCCTGT CCCCTGAGTT TTGCCCGCAT CGCCGCATCC
GGCGGGCTGG TGAACGAGGA GGTGCTGTGC CGCACCCGCG ACGGACGCAG CTTCACCGGG
CTCGTCTCGG CACGGGCCGT ACCGCAGGAC GACGATGTAC AGTCATACGT CGACGGCTTC
CTGCTCGACA TCTCGCAACT CAAAGAGGCA CGGGACAAGC TACGCCAGAC AAGCCGCAAC
CTGGCCGACA TCATCGACTT CTACCCCGAT GCCACGCTCG TGGTCGATGC CGCAGGAAGG
CTGGTGGCAT GGAACAGGGC CATGGAAGAA CTCACGGGCA TCGCCGCGGC CGACATGATA
GGCAAGGGCG ACTACGAATA TGCCCTGCCG TTCTACGGTG AGCGCATCCC CATTCTGTGC
GACCTGCTGC GCAACCCGGC CATCATCCCG GCCGCGCGGT ACAGTCTTCT TGAGCAGACT
GAACACCGCA TCGTGGTGGA ACTGCCTCTT CCGTTCTTCC GCAAGGGGCG CGGGCTGTTC
GTGTGGACGG CGGCATCGGC CCTCACGGAC GAACACGGCA AGGTCACCGC AGTCATACAG
GTCATCCGTG ACGTGACCGA ACGCAGGATT GAACTGGAAG CGCTCGCCAA AAGCCGCGAG
CGCTACCAGA TGGCCATCGA AGCCACCAAC GAGGGAATCT GGGAATGGGA CGTCACCACC
GGCGAACTCT ACCATTCACC CCGTTGTGTC GAGATACTGG GCCGTGGGGG CGCAAGCGCA
CCTGACACCC TTCTCCGCGA CCTCTCCCTG CAGGTTCATC CGGATGACAG GCTGAGGATG
GTGACGCTGA CGCAATCGCT CATGACGGAA CCCGTCGAAC GCTTCTCGCT GGAATGCCGG
ATGCGCCATC CCGTACAGGG TTGGCGGTGG GTACTCTGCC ACGGCGTCGT CCAGCGCAAC
GGTTCAGGCG GGCCAAGACG CATCACCGGG TCCATCGCGG ACATCACCGA GCGCAAACAG
AGTGAGATCA TCAGTGCCAT CCTGCTGCAG ATATCCAACG CGGTGAATGT CACCCACGAC
ATCGAGGGGC TGTTCAGTAC CATCCATGAC ATCCTGCGCA GCTATGTCGC CGCCGAGAAC
TTCTTCATCG CCCTCGTCGA CGAGAAGCTG GACCGGCTCG AATTCCCCTA CCATACCGAC
GAGAAGGACC CTTCCCTGCC GCGGCTGGAG AGCATCTCGA GCCTTGCCTC GCCGCCCCCG
ACCCTTGAGG TCATCCGCAC CGGGCGCCAG CTGCTGCTCT CATACGAAGA CCTGCTAGGC
CGCGCCTACA TCGGCACCAT CGCCTCGGTC TGGCTGGGGA CCCCCCTCAG AGTGCGCGGC
AAGGTCATCG GTGCCATGGT GCTGCAGCAC TACTCCGACC CCGATGCCTT CTCCGACAGC
GACGCACGCC TCATGACTTC GCTCGCCGAC CAGATTGCCG TGGCCATCGA GCGCAAGCAG
AACGAAGAGC AACTCACCTA CCTCGCCCTG CACGACAGCC TCACGGGGCT GCCCAACCGT
ACGCTGCTTC TCGAACGCAT CGAACAGGCG CGGCTACGCT CGTTGCGCGG CAAGGGGCGC
TCGTTCGCCG TCATGATGAT CGACCTCGAC AGGTTCAAGA TCATCAACGA CAGCCACGGG
CACGCCGTGG GCGACAGGCT GCTCCAGATG GTCTCTGCGG CGGTGCGCCC CGTGCTGCGC
CCTGCGGACA CGGTGGCCCG CCTCGGTGGT GACGAATTCG CCATCCTGCT GGAGGATGTC
GCCACCCCGC GCGAAGTGGT GCATGTCGCC CGCCGGGTCA TCAAGGCCGT CGAACGACCT
GCGCGCGTCG CCAACAAGCT GCTGCGAACC TCGGCCAGCG TCGGCATCGT GCTGCGCACC
GATGGCTACG GTTCCGCCGA CGAACTGCTC CGCGACGCGG ACATCGCCAT GTATCAGGCC
AAGGAACAGG GGCGCGGACG GTTCAGGGTG TTCAACCGCA CCATGCACCA GCAGGCCATG
GACGCCATGA ACCTCGAGAA CGACCTTGGG GCGGCACTCC GCTGGGGACA GTTCGAACTG
GACTACCAGC CGGTATTCGA CACGCGCTCG CGCGCGCTGC TCGGATTCGA AGCCCTTGTG
CGCTGGCGTC ACCCCCTCAG GGGACTCATT CCGCCCACGG CGTTCATCCC CGTGGCTGAA
GAGACGGGCA TCATCACACG CCTCGGCCAC TGGGTGCTCG AAACCGCGCT GACGGCACTG
GCGCGCTGGC GCCTGCAGAT TCCCGGCATC GATGACCTCT ACGTGGCCGT GAACATGTCC
GCCCTGCAAT TCGCGCAACC CACGCTGCCG GGAAGCGTGC GCGACGCATT GCAAAAGACG
GGGCTACCCG CCTCATGCCT CAAGGTGGAA ATAACCGAAA CGGCCATCAT GCAAGACCCC
ACAACGGCCC TGCAACGCAT CTCGGCCCTG CGCGACCTCG GGGTAGGCAT CGGCATCGAC
GACTTCGGCA CCGGCTATTC ATCGCTGGCC TATCTGCAGC GGTTCCCGGT CGACACCCTC
AAAGTCGACA GGTCGTTCGT CTCGCAGTCC ACCACACCCG AAGGCGAAGG CAACCGTGAA
ATCGTTCGGG CCGTCGTCGT GCTTGCCCAC AGCCTCTCAC TGGCGGTCGT GGCGGAGGGG
GTGGAGACCG AAGAACAGTT CGCCTTCCTC GCCGGACTGG GATGTGATGC CGTGCAGGGC
TACCTGCTGT CACGCCCGGT ACCCGAGGCC GACATTCCGG CCCACATCTC CACCACATGG
GCACTGCCCG CGCAGGGCGA CGCCATCCCT GAGTCGCCGT AG
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| Protein sequence | MSRYIRALLC CVVIALIVAG ASPIRASDVG SLPLRLALRP DMPPYQFFDM EGRPQGLVVT
VWESWTRATG TPVIFVPVTE NEIPDAFARS RIDAVAALPA QLLPRFGLAE AAEVGHLSVG
IFSHTGTSSP DPADQGQGSV TSPAIPAGMG LATILQDTLP GVNPVVFPDT TSLLAAAHAG
NVRQIALYMA HGDYLRKHGR LEGFDAGIAV ASSRLVAALP AADIARKQRI RLGFSRLADT
DHRDLEAMWH GAQTAFPFMR PLVLLGALTF LLLVVVLGRN LALRRRMEKE RAERRRTENM
LDGFLERLPD NHFTLNVDGT GAVVMASNGT EDVLGVSPDE APSRLRHLLP PTKDGAWSQA
SFSIEAAHAD GSLRTLDCLA TTPDERGHRR VLVFDTTRRN LERQRVEAIH HRYMSILDNA
PVGIFRIMPD GSMVGANREM ARLWGFSSPE ELLASEEARR LILCDDPKAC PLSFARIAAS
GGLVNEEVLC RTRDGRSFTG LVSARAVPQD DDVQSYVDGF LLDISQLKEA RDKLRQTSRN
LADIIDFYPD ATLVVDAAGR LVAWNRAMEE LTGIAAADMI GKGDYEYALP FYGERIPILC
DLLRNPAIIP AARYSLLEQT EHRIVVELPL PFFRKGRGLF VWTAASALTD EHGKVTAVIQ
VIRDVTERRI ELEALAKSRE RYQMAIEATN EGIWEWDVTT GELYHSPRCV EILGRGGASA
PDTLLRDLSL QVHPDDRLRM VTLTQSLMTE PVERFSLECR MRHPVQGWRW VLCHGVVQRN
GSGGPRRITG SIADITERKQ SEIISAILLQ ISNAVNVTHD IEGLFSTIHD ILRSYVAAEN
FFIALVDEKL DRLEFPYHTD EKDPSLPRLE SISSLASPPP TLEVIRTGRQ LLLSYEDLLG
RAYIGTIASV WLGTPLRVRG KVIGAMVLQH YSDPDAFSDS DARLMTSLAD QIAVAIERKQ
NEEQLTYLAL HDSLTGLPNR TLLLERIEQA RLRSLRGKGR SFAVMMIDLD RFKIINDSHG
HAVGDRLLQM VSAAVRPVLR PADTVARLGG DEFAILLEDV ATPREVVHVA RRVIKAVERP
ARVANKLLRT SASVGIVLRT DGYGSADELL RDADIAMYQA KEQGRGRFRV FNRTMHQQAM
DAMNLENDLG AALRWGQFEL DYQPVFDTRS RALLGFEALV RWRHPLRGLI PPTAFIPVAE
ETGIITRLGH WVLETALTAL ARWRLQIPGI DDLYVAVNMS ALQFAQPTLP GSVRDALQKT
GLPASCLKVE ITETAIMQDP TTALQRISAL RDLGVGIGID DFGTGYSSLA YLQRFPVDTL
KVDRSFVSQS TTPEGEGNRE IVRAVVVLAH SLSLAVVAEG VETEEQFAFL AGLGCDAVQG
YLLSRPVPEA DIPAHISTTW ALPAQGDAIP ESP
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