| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_0439 |
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| Symbol | rpoB |
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| ID | 4662688 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | - |
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| Start bp | 563486 |
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| End bp | 567604 |
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| Gene Length | 4119 bp |
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| Protein Length | 1372 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639818643 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_965889 |
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| Protein GI | 120601489 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.746649 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCCAGC TTACGAAGAA GTTCGGCAAG ATCGATGTCT CGCTCCCCAT TCCGCATCTG
CTGAACCTGC AGGTGGATTC CTATGTGAAA TTCCTGCAGG AAGGAGCGAC CGAACGCAGA
CACGATGAAG GCCTCGAAGG GGTCTTCAGG TCGGTGTTCC CCATTGAGGA TTTCAACCGA
ACCGCCAGTC TCGAGTTCGT CAGCTATGAA GTGGGCGAAC CCAAGTACGA CCAGCCCGAA
TGCATATCCA AGGGCCTCAC CTACGAAGCG CCCATTCGCA TAAAGGTTCG TCTCGTCGTC
TATGACGTGG ACGAAGACTC TGGCAACCGC ACCATCCGTG ACATCAAGGA ACAGGAGATC
TACTTCGGTA CCCTGCCCCT GATGACCGAG AAGGGCACCT TCATCATCAA CGGCACCGAA
CGCGTCATCG TCAACCAGTT GCAGCGTTCG CCCGGTATCA TCTTCGAGCA CGATTCGGGC
AAGACCCATT CGAGCCGCAA GGTGCTCTAC TCGTGCCGCA TCATCCCCAT GCGCGGCTCG
TGGCTCGATT TCGACTTCGA CCACAAGGAC ATCCTGTACG TCCGCATCGA CCGCCGCCGC
AAGATGCCCG CGACCATCCT CTTCAAGGCG ATGGGGATGT CCAAGACCGA CATCCTCGAC
TACTTCTACA AGAAGGAGTT CTACCGCCTC GACCCCATGG GCCGTCTCAT GTGGGAAGTC
CAGAAGGACA TGTACCGCAA GGATTCTGCC TTCGTCGACA TCGAGGACGG CAAGGGCGGT
ACCATCGTCA AGGCTGGCAA GCCCATCACC AAGCGTGCAT GGCGCCTCAT CTCCGAAGCC
GGGCTCGAGA CCATTGAGGT GGCTCCTGAC ACCATCGAGG GCATGTTCCT CGCCGAAGAC
ATCGTGAACC CGGCCACTGG TGAAGTGCTT GCCGAGGCTG CCGACGAAAT CACCGCTTCG
CTGGTCGAGA ACCTGCGCGA AGCCGGCATT TCGCGCCTGC CCGTGCTGCA CACCAAGGGT
CTTGAGACCT CGTCTTCGCT TCGCGACACC CTCGTGCTGG ACAAGACCCC CGACATGGAG
GCCGCACAGG TCGAGATATA CCGTCGCCTG CGTCCGAGCT CGCCGCCCAC GCCTGAGATC
GCCGCGTCGT TCTTCGACAA TCTCTTCCGT AGCGCCGACT ACTACGACCT GTCGCCGGTG
GGCCGCTACA AGCTCAACCA GCGTCTTGGC ATCGACCAGT CCGTCGACCT GCGCACCCTC
ACCGATGACG ACATCCTGCG CGCCATCCGC GTGCTCCTGC ACCTGAAGGA CTCGCACGGC
CCTGCCGACG ACATCGACCA TCTGGGCAAC CGCCGTGTGC GCCCCGTGGG CGAACTGGTC
GAGAACCAGT ACCGCATCGG TCTCGTCCGC ATGGAACGCG CCATCAAGGA ACGCATGAGC
CTTCAGGAAG TCTCCACGCT CATGCCGCAC GACCTCATCA ACCCGAAGCC CGTGGCCGCG
GTGCTGAAGG AGTTCTTCGG AACCTCGCAG CTTTCGCAGT TCATGGACCA GACCAACGCC
CTTTCCGAAG TGACGCACAA GCGTCGTCTC TCGGCCCTCG GCCCCGGTGG TCTGACGCGC
GAACGTGCGG GCTTCGAAGT ACGAGACGTG CACACGTCGC ACTACGGTCG TATCTGCCCC
ATCGAAACGC CTGAAGGCCC GAACATCGGC CTCATCGTTT CGTTGACCAC CTACGCCAAG
GTGAACGATT TCGGCTTCAT CGAGACGCCC TATCGCATCA TCCGCGAAGG AGCCCTCACC
GACGACATCA AGTTCCTCGA CGCCTCGCGC GAACAGGGCG AAGTCGTGGC GCAGGCCAAC
GCAGCCGTCG ATGCCGATGG CAAGCTGGCA GACGAATACG TCACCGCCCG CGTGCGCGGC
GACGTGCTCA TGTCGCACCG TGACGAAGTG ACGCTGATGG ACATCTCGCC CAGCCAGATG
GTCTCCATCT CCGCCGCGCT CATCCCCTTC CTTGAGCACG ACGACGCCAA CCGCGCGCTC
ATGGGTTCGA ACATGCAGCG TCAGGCCGTG CCGCTTCTCC GTTCCGAGAA GCCCATCGTC
GGCACCGGCA TGGAAGGCGA CGTGGCCCGC GACTCGGGCG CGTGCATCCT CGCCGAAGGC
CCCGGCATCG TGCGCTACGC CGACGCCACG CGCATCATCG TCAGCTACGA GAACGGGCTC
TACCCCGATC GTGGCGGCGT GCGCGCGTAC GACCTTCAGA AGTACCACAA GTCCAACCAG
AACTCGTGCT TCGGCCAGCG TCCCACCTGT CATCCCGGGC AGATCGTCAA GAAGGGCGAC
GTGCTCGCCG ACGGCCCCGG CATCGAGGAT GGCGAACTGG CCCTCGGCAA GAACCTCGTC
GTGGCCTTCA TGCCCTGGTG CGGTTACAAC TTCGAAGACT CCATCCTCAT CTCCGAACGG
GTGGTGAAGG AGGACGTCTT CACTTCGATC CACATCGAAG AGTTCGAAGT CGTCGCCCGT
GACACCAAGC TCGGCCCCGA AGAGATCACC CGCGACATCC CGAACGTCGG CGAGGACATG
CTCCGCAACC TCGACGGCAG CGGCATCATC CGCATCGGTG CCAGCGTGAA GCCCGACGAC
ATCCTCGTCG GCAAGATCAC GCCCAAGGGC GAGACCCAGC TCACCCCCGA AGAGAAGCTC
CTCCGGGCCA TCTTCGGCGA CAAGGCACGC GACGTGAAGA ACACCTCCCT CAAGGTACCC
CCGGGCATCG AGGGAACCAT CATCGATGTG AAGGTGTTCA ACCGTCGTTC CGGCGAGAAG
GACGAGCGCA CCCGCAATAT CGAAGACTAC GAGACCGCGC GCATCGACAA GAAGGAACAG
GACCACGTCC GTGCCCTTGG CGATGCCCTG CGCGACCGTC TCGCCGATAC CCTGGTGGGC
AAGCAGATTG CCGTCACCCT GCCCGGCAAG CGCAAGGGCG AGGTGCTGGC TGAAGCTGGT
GCCCCCATGA CCCGCGAACT TCTCGACGCC CTGCCCGTCA AGCGGCTGGC AGGTCTGTTC
AAGAGCCGTG AGGTCGACGA GATGGTCGAC ACGGCCCTCG AGGATTACGA CCGTCAGGTG
GCCTTCCTCA AGGGCATCTA CGACTCGAAG CGCGAGAAGG TCACCGAAGG CGACGACCTG
CCCCCCGGCG TCATCAAGAT GGTCAAGGTG CACATCGCCG TGAAGCGTAA GCTGAACGTG
GGCGACAAGA TGGCCGGCCG TCACGGTAAC AAGGGTGTCG TTTCGTGCAT TCTGCCCGAA
GAGGACATGC CCTTCTTTGC CGACGGACGC CCGGTCGACA TCGTGCTGAA CCCCCTCGGC
GTGCCTTCGC GAATGAACAT CGGCCAGATC ATGGAGACCC ACCTCGGGTG GGGTGCCAAG
GAACTGGGCC GTCAGCTCGC CGAAATGCTC GACAGCGGTG CCGCCATGGC AACGCTGCGC
CACGAGGTCA AGGACGTGTT CCGTTCCGCC ACCATCGCCA AGTTGGTCGA CGAGATGGAC
GACGAGACCT TCCGCAAGGC CGTGTCGAAA CTGCGCACCG GCATCGTGAC CAAGACCCCC
GTCTTCGACG GCGCGTCCGA AGAGGACATC TGGTCGTGGA TCGAGCGCGC AGGCATGGAC
GGGGACGGCA AGACGGTACT GTACGACGGC CGCACCGGTG ACAAGTTCTA CAACCGCGTC
ACCACCGGGG TCATGTACAT CCTCAAGCTG CACCACCTGG TCGACGAGAA GATACACGCC
CGCTCCACGG GCCCGTACTC CCTCGTCACC CAGCAGCCCC TTGGCGGCAA GGCCCAGTTC
GGTGGCCAGC GTCTGGGTGA AATGGAAGTG TGGGCACTCG AGGCATACGG CGCATCGTAC
CTCCTGCAGG AGTTCCTCAC CGTCAAGTCC GACGACGTGA CGGGCCGCGT GAAGATGTAC
GAGAAGATCG TGAAGGGCGA CAACTTCCTC GAAGCCGGTC TGCCCGAATC GTTCAACGTT
CTCGTCAAGG AACTCATGTC GCTGGGTCTG AACGTGACGC TGCATCAGGA AGAAGGCAAG
AAGCGCCCGA AGCGTGTCGG CTTCATGAGC GCGCTCTAG
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| Protein sequence | MGQLTKKFGK IDVSLPIPHL LNLQVDSYVK FLQEGATERR HDEGLEGVFR SVFPIEDFNR
TASLEFVSYE VGEPKYDQPE CISKGLTYEA PIRIKVRLVV YDVDEDSGNR TIRDIKEQEI
YFGTLPLMTE KGTFIINGTE RVIVNQLQRS PGIIFEHDSG KTHSSRKVLY SCRIIPMRGS
WLDFDFDHKD ILYVRIDRRR KMPATILFKA MGMSKTDILD YFYKKEFYRL DPMGRLMWEV
QKDMYRKDSA FVDIEDGKGG TIVKAGKPIT KRAWRLISEA GLETIEVAPD TIEGMFLAED
IVNPATGEVL AEAADEITAS LVENLREAGI SRLPVLHTKG LETSSSLRDT LVLDKTPDME
AAQVEIYRRL RPSSPPTPEI AASFFDNLFR SADYYDLSPV GRYKLNQRLG IDQSVDLRTL
TDDDILRAIR VLLHLKDSHG PADDIDHLGN RRVRPVGELV ENQYRIGLVR MERAIKERMS
LQEVSTLMPH DLINPKPVAA VLKEFFGTSQ LSQFMDQTNA LSEVTHKRRL SALGPGGLTR
ERAGFEVRDV HTSHYGRICP IETPEGPNIG LIVSLTTYAK VNDFGFIETP YRIIREGALT
DDIKFLDASR EQGEVVAQAN AAVDADGKLA DEYVTARVRG DVLMSHRDEV TLMDISPSQM
VSISAALIPF LEHDDANRAL MGSNMQRQAV PLLRSEKPIV GTGMEGDVAR DSGACILAEG
PGIVRYADAT RIIVSYENGL YPDRGGVRAY DLQKYHKSNQ NSCFGQRPTC HPGQIVKKGD
VLADGPGIED GELALGKNLV VAFMPWCGYN FEDSILISER VVKEDVFTSI HIEEFEVVAR
DTKLGPEEIT RDIPNVGEDM LRNLDGSGII RIGASVKPDD ILVGKITPKG ETQLTPEEKL
LRAIFGDKAR DVKNTSLKVP PGIEGTIIDV KVFNRRSGEK DERTRNIEDY ETARIDKKEQ
DHVRALGDAL RDRLADTLVG KQIAVTLPGK RKGEVLAEAG APMTRELLDA LPVKRLAGLF
KSREVDEMVD TALEDYDRQV AFLKGIYDSK REKVTEGDDL PPGVIKMVKV HIAVKRKLNV
GDKMAGRHGN KGVVSCILPE EDMPFFADGR PVDIVLNPLG VPSRMNIGQI METHLGWGAK
ELGRQLAEML DSGAAMATLR HEVKDVFRSA TIAKLVDEMD DETFRKAVSK LRTGIVTKTP
VFDGASEEDI WSWIERAGMD GDGKTVLYDG RTGDKFYNRV TTGVMYILKL HHLVDEKIHA
RSTGPYSLVT QQPLGGKAQF GGQRLGEMEV WALEAYGASY LLQEFLTVKS DDVTGRVKMY
EKIVKGDNFL EAGLPESFNV LVKELMSLGL NVTLHQEEGK KRPKRVGFMS AL
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