| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_0438 |
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| Symbol | |
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| ID | 4662702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | - |
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| Start bp | 559221 |
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| End bp | 563378 |
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| Gene Length | 4158 bp |
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| Protein Length | 1385 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 639818642 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_965888 |
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| Protein GI | 120601488 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTAG ACGATCTGTT CACCGTCCGG GGCTCGGCGG CCAACATCGC GAACATACGC
AACCTGAAGG CGATTCAGAT AACCATCGCT TCGCCCGAGA ACATCCGCGA GTGGTCGTAC
GGCGAGGTCA AGAAGCCCGA GACCATCAAC TACCGTACGT TCAAGCCCGA GCGCGATGGC
CTCTTCTGCG CCAAGATATT CGGCCCTGTG AAGGACTACG AGTGCAACTG CGGCAAGTAC
AAGCGCATGA AGCACCGTGG CATCGTCTGC GAGAAGTGCG GCGTCGAGGT CATCGCCTCG
AAGGTGCGCC GCGAACGCAT GGGCCACATC GAACTCGCCG CGCCTGTCGC CCACATCTGG
TTCCTGAAGA CCCTGCCGTC CAAGATCGGC ACCCTTCTGG ACATGACGAT GGCCGACCTT
GAAAAGGTGC TGTACTTCGA CTCGTACATC GTGCTCGATC CGGGCAGCAC CAACCTCACC
AAGATGCAGG TCATCTCCGA AGACCAGTAT CTGCAGGTCA TCGACCACTA CGGCGAGGAC
GCCCTCACCG TGGGTATGGG TGCCGAAGCC GTGCGCTCGC TGCTCGAGGA GCTCAACCTC
GAAGAACTGC GCGTGCAGCT TCGCGAGGAA TCGCAGGCCA CCAAGTCGCA GACCAAGAAG
AAGAAGCTCA CCAAGCGCCT GAAGATCGTC GAGGCGTTCC TCGAATCGAA CAACAAGCCC
GAGTGGATGG TGATGGAAGT CATTCCCGTC ATTCCGCCCG AGCTTCGTCC GCTCGTGCCC
CTCGACGGCG GTCGCTTCGC CACGTCCGAC CTCAACGACC TGTACCGCCG CGTCATCAAC
CGCAACAACC GCCTCAAGCG GCTGATGGAA CTGGGCGCGC CCGACATCAT CATCCGCAAC
GAAAAGCGCA TGTTGCAGGA AGCCGTCGAC GCCCTGTTCG ACAACGGTCG CCGTGGTCGC
GCCATCACCG GCACCAACGG CCGTCCGCTC AAGTCGCTCT CCGACATGAT CAAGGGCAAG
CAGGGCCGCT TCCGTCAGAA CCTGCTCGGC AAGCGCGTCG ACTACTCGGG CCGTTCGGTC
ATCGTCGTGG GCCCCAAGCT CAAGCTGCAC CAGTGCGGCC TGCCCAAGAA AATGGCCCTC
GAACTGTTCA AGCCCTTCAT CTACTCCGAA CTCGAGAAGA GGGGCCTCGC CTCCACCATC
AAGAGCGCCA AAAAGATGGT GGAGCGTGAA GAACTGGTCG TGTGGGACAT CCTCGAAGAG
GTCGTGCGCG AATATCCCAT CATGCTCAAC CGTGCGCCCA CGCTGCACCG TCTGGGCATC
CAGTCGTTCG AACCGCTGCT TGTCGAAGGC AAGGCCATCC AGCTGCACCC GCTCGTGTGT
TCCGCCTACA ACGCGGACTT CGACGGTGAC CAGATGGCCG TGCACGTGCC CCTCTCCGTA
GAGGCGCAGA TAGAATGCCG CGTGCTCATG ATGAGCACCA ACAACATCCT GTCACCCGCC
AACGGTTCGC CCGTCATCGT GCCTTCGCAG GACATCGTCC TCGGTCTGTA CTACATGACC
GTCGACCGTT CCTTCGAAAA GGGCGAGAAC ATGTCGTTCT GCGCCCCGTG GGAAGTGGTC
GCCGCCTACG ACGCCGGCGT GGTCGCCCTG CATGCCCGTA TCAACGTGCG CATGGAGGAC
GGCAAGGTCG TCCGCACCAC CGTGGGCCGC ATCCTCGTGT GGGAGCTTCT GCCCCACTGC
GTGCCCTTCA GCATGGTCAA CACCACGCTG ACCAAGAAGA ACATCGCCCG CCTCGTGAGC
ACCGCCTACC GTGACGCTGG CACCAAGGCC ACCGTCATCC TGTGCGACCG CCTCAAGGAC
GTGGGTTACG AATACGCCAC CCGCGCCGGT GTCACCATCG CCGTGAAGGA CCTCACCATC
CCCTCCACCA AGAAGGGGCT GATCGAGACC GCACAGAACG AGGTGGACGA CATCGAACGC
CAGTACCGCG ACGGTATCAT CACCCGTACG GAAAAGTACA ACAAGGTCGT CGACGTGTGG
ACGAAGGCCA CGCAGGACGT CTCCAACGAG ATGATCCGCG AGATCTCCTC CGACATCGTC
GAAGACCCGC GCACCGGAGC GAAGGAAGCC AACAGCAGCT TCAACTCCAT CTACATGATG
TCCACCTCCG GCGCGCGAGG CAACCAGGAC CAGATGCGCC AGCTTGCAGG CATGCGCGGT
CTGATGGCCA AGCCCTCGGG CGAGATCATC GAGACCCCGA TCACCTCGAG CTTCCGCGAA
GGTCTCTCGG TGCTCCAGTA CTTCACCTCG ACACACGGTG CACGTAAGGG TCTCGCCGAC
ACCGCACTCA AGACGGCGAA CTCCGGTTAC CTCACCCGTC GACTCGTCGA CGTCGTGCAG
GACGTGATCG TCAGCGAACA CGACTGCGGC ACCGTCGACG GCATCGAACT GACGCACATC
AAGGAAGGCG GCGAGATCAA GATCCCGCTG GCCGACCGTG CCCTTGGTCG CGTGCTGCTG
TACCCCGTGT ACGACCCCGA GACCCGCGAC CTGCTCTTCC CCGAGAACAC CCTCGTCGAC
GAGAACGTCG CCAAGGTGCT CGTGGAACGT GAAGTCAGCT CGGTGATGAT CCGCTCGGCC
CTCACCTGCC AGAGCGACCG CGGCATCTGC ACCCTGTGCT ACGGCCGCGA CCTCGCCCGC
GGACACATCG TCAACATCGG CGAAACGGTC GGCATCATCG CCGCCCAGTC CATCGGCGAA
CCCGGCACGC AGCTCACCAT GCGTACGTTC CACATCGGTG GTACGGCGTC CCGCGAGATC
GAACGTTCGA GCTTCGAGGC GCAGCACCCC GGCCGTGTCA TCCTGTCGCG CGTGAAGGCC
GTCCGCAACC GCGATGGTCA GTACATGGTC ATGGGCAAGA GCGGCCAGCT CGCCATCGTC
GACGATCAGG GCCGTGAGCG TGAGAAGTAC ACGCTGCCCA ACGGCTCGCG TCTGCTCGTG
ACGGAGGGTG AAGAGATCCG CAAGGGCCAG ATTCTGGCCG AATGGGACCC CTTCAACGAA
CCCTTCGTCT CGGAAGTGGA CGGTGTGATC AGGTTCTCGG ACATCGTGGA AGGCAAGACC
TTCCAGGAGA AGATGGACGA AGCCACACGC ATGACCACGC AGACCATCAT CGAGTACCGT
ACCACCAACT TCCGGCCCTC GATATCCATC TGCGACGAAC ACGGCGAAGT GAAGATGCGC
GGCAACAACA TCCCCGCCAC GTACTCTCTG CCTGTCGGCG CCATCATCAT GGTCAAGAAC
GGGCAGGACT TGCAGGCCGG TGACATCATC GCCCGTAAGC CCCGCGAGAC CTCGAAGACC
AAGGACATCG TCGGCGGTCT GCCGCGCGTC GCCGAACTCT TCGAAGTCCG CAAGCCCAAG
GACATGGCCG TGGTCTCCGA AATCGCAGGT ATCGTCACCT ACGCCGGAGA GACCAAGGGC
AAGCGCAAGC TCGTGGTCAC CCCCGAAATC GGTGAGGCCA AGGAATACCT CGTGCCCAAG
GGCAAGCACA TCACCGTCAC CGACGGCGAC TTCGTGGAAG CGGGCGACCT GCTGACCGAA
GGGCATCCCG AACTGCACGA CATCCTGCGC ACCCGCGGCG AGAAGTACCT CGCCCGCTAC
CTGACCGATG AAATCCAGGA AGTGTACCGC TTCCAGGGCG TTGCCATCGA CGACAAGCAC
ATCGAAGTCA TCGTGCGCCA GATGCTGAAG AAGGTCACCG TCCTCGATCC GGGCGGAACG
ACCTTCCTCG TGGGCGAGCA GGTCGACAAG GGCGAATTCC GCGTCGAGAA CACCCGCGCC
ATGGGCGAGG GACGCACCCC GGCTACGGCC GAACCGCTGG TTCTCGGTAT CACGCAGGCA
TCGCTGACCA CCTCGTCGTT CATCTCGGCA GCCTCCTTCC AGGAGACCAC CAAGGTGCTC
ACCGAAGCCT CGCTGCGTGG CAAGATGGAC TACCTGCGCG GTCTCAAGGA GAACGTCATC
GTGGGTCGCC TCATCCCCGC CGGTACGGGA TACCGCGAGT ATGTCAACAC CGACATCCTC
GTGCCCGAAC AGCGTGAACG CCCCGACAAG TTCCTCGAAG ACCTCGAAGA GAACCCCCTG
CTGGTGGACA TCTACTAG
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| Protein sequence | MTLDDLFTVR GSAANIANIR NLKAIQITIA SPENIREWSY GEVKKPETIN YRTFKPERDG
LFCAKIFGPV KDYECNCGKY KRMKHRGIVC EKCGVEVIAS KVRRERMGHI ELAAPVAHIW
FLKTLPSKIG TLLDMTMADL EKVLYFDSYI VLDPGSTNLT KMQVISEDQY LQVIDHYGED
ALTVGMGAEA VRSLLEELNL EELRVQLREE SQATKSQTKK KKLTKRLKIV EAFLESNNKP
EWMVMEVIPV IPPELRPLVP LDGGRFATSD LNDLYRRVIN RNNRLKRLME LGAPDIIIRN
EKRMLQEAVD ALFDNGRRGR AITGTNGRPL KSLSDMIKGK QGRFRQNLLG KRVDYSGRSV
IVVGPKLKLH QCGLPKKMAL ELFKPFIYSE LEKRGLASTI KSAKKMVERE ELVVWDILEE
VVREYPIMLN RAPTLHRLGI QSFEPLLVEG KAIQLHPLVC SAYNADFDGD QMAVHVPLSV
EAQIECRVLM MSTNNILSPA NGSPVIVPSQ DIVLGLYYMT VDRSFEKGEN MSFCAPWEVV
AAYDAGVVAL HARINVRMED GKVVRTTVGR ILVWELLPHC VPFSMVNTTL TKKNIARLVS
TAYRDAGTKA TVILCDRLKD VGYEYATRAG VTIAVKDLTI PSTKKGLIET AQNEVDDIER
QYRDGIITRT EKYNKVVDVW TKATQDVSNE MIREISSDIV EDPRTGAKEA NSSFNSIYMM
STSGARGNQD QMRQLAGMRG LMAKPSGEII ETPITSSFRE GLSVLQYFTS THGARKGLAD
TALKTANSGY LTRRLVDVVQ DVIVSEHDCG TVDGIELTHI KEGGEIKIPL ADRALGRVLL
YPVYDPETRD LLFPENTLVD ENVAKVLVER EVSSVMIRSA LTCQSDRGIC TLCYGRDLAR
GHIVNIGETV GIIAAQSIGE PGTQLTMRTF HIGGTASREI ERSSFEAQHP GRVILSRVKA
VRNRDGQYMV MGKSGQLAIV DDQGREREKY TLPNGSRLLV TEGEEIRKGQ ILAEWDPFNE
PFVSEVDGVI RFSDIVEGKT FQEKMDEATR MTTQTIIEYR TTNFRPSISI CDEHGEVKMR
GNNIPATYSL PVGAIIMVKN GQDLQAGDII ARKPRETSKT KDIVGGLPRV AELFEVRKPK
DMAVVSEIAG IVTYAGETKG KRKLVVTPEI GEAKEYLVPK GKHITVTDGD FVEAGDLLTE
GHPELHDILR TRGEKYLARY LTDEIQEVYR FQGVAIDDKH IEVIVRQMLK KVTVLDPGGT
TFLVGEQVDK GEFRVENTRA MGEGRTPATA EPLVLGITQA SLTTSSFISA ASFQETTKVL
TEASLRGKMD YLRGLKENVI VGRLIPAGTG YREYVNTDIL VPEQRERPDK FLEDLEENPL
LVDIY
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