Gene Dvul_0313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_0313 
Symbol 
ID4664369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand
Start bp391833 
End bp393563 
Gene Length1731 bp 
Protein Length576 aa 
Translation table11 
GC content66% 
IMG OID639818514 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_965763 
Protein GI120601363 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGACG GCGTGCCGGG GGCCGTTTCA GCTGTGGCCT CTGCCACACC GGGAACGGAG 
TCCCTACCGT CACCCTTCGA CATCCTCGCC GACCATCTTG CCGACTGGGA ATGCTGGGAA
TCGCCCGAAG GACGGGTGCA TTTCGTAACA CCCGCCTGCC AGCGCATATC GGGTTTCGGC
ATCGACAACT TCCGCGCCCA CCATCTCTTC ATCGAAGGTC TCATCCACCC CGATGACCTG
CCGGCATGGC GCAGGCATCG CGAGATGCTC ACAGCCGGTC TGCCCAAGGC CGAAGTCGAA
ATCCGCATCC GCACGGCCGA AGGGGGCGAG AAGTGGCTTG CCGTCACCAG TCGCAACCTG
ACCGACGGCC ACGGTGAACC GCTAGGCATC CGTTCCAGCC TGCGCGACAT CACCGACCGC
AAGATGGTGC TCTCCCAGTT GCGGCATCAG GCGTGGCACG ACCCCCTCAC CGGGTTGCCC
AACCGTGCCC TGTGCCTCGA CCGCCTCGAC CGGGCACTCG GCAGGCTGGC GCGGGGCAAC
GGCGAACTCT GCGCCGTAGT GTTTCTCGAC CTCGACCGCT TCAAGCTGGT CAACGACACA
CTGGGCAACG CGGCTGGCGA CAGGGTGCTG CGCGAGACCG CCCGCAGACT GGGCACGGCG
ACCCGCAGCA CCGACACGGT CTCTCGCCTC GGCAGCGACG AGTTCATCAT CCTCATCGAA
GACCTGCGGG GAGAGGACGA GGCCCGCGCC ACCCTCGGCA GACTGCGCGA GGCGCAACGC
GCCCCCTTCG ACATCGACGG CAGGCATCTT CGGGTGACCG CCAGCATGGG CGTGGTGCTC
GCACGCGGCG GCAACGCCGA CGAGGTGCTG CGCAACGCCA ACATCGCCAT GCACCACGCC
AAGGAACATG GCGGCGACGC GGCGTCGTTC TTCCATGCCT CCATGCTCGA AGAGGCCCTC
GACCTGATGC AGCTCGAAAT CGACCTGCAC CGCGCCCTCG AGAATGACGA GTTCTTCCTC
GTGTACCAGC CCATCGTCTC GGTGGTCGAC CGGCGCATCA CCGGCTTCGA GGCACTGCTG
CGCTGGCGCC ACCCCGAACG TGGCGTCGTG GGGCCGGACG CCTTCATCGC GCTGGCAGAG
CACTCCGGGC TCATCCACCT GCTCGGGCGC AAGGCCCTTG ATGAGGCGTG CCGCACGCTC
GCCAAGTGGC GCAGGGTCGA CCAGCTGTTC GACGGCCTCA CCATGCACGT GAACCTCTCC
GCCCGACAGC TTTCGCAGAC CCACATCGTG GAACAGGTGG CAGAGGCCCT GCGCGACTCG
TGCCTGCCGC CGCACCTGCT CAAGCTTGAA GTGACCGAGA CCATGCTCAT GGAGAACCCC
GACTACGCCA ACGCTGTCCT CTGCCGCCTG CGCGACATCG GCGTGGGTGT CTGTGTCGAC
GACTTCGGCA CCGGGTACTC GTCTCTCAGC TACCTGCAAC GATTCCCCAT CGACACGCTC
AAGGTCGACC GCAGCTTCGT CAGCCGCATG ACGCGCGAAC CCGGTCAGTT CAAGATCGTG
CAGGCGGTCA TCGCGCTGGC GCACAGCCTC GGCCTTGAAG TGGTGGCCGA AGGCGTCGAG
GATGAAGAGC AGCGCATCAT GCTGCTGGGC CTCGCCTGCC GCTACGCACA GGGCTTCCTG
TTCGCGAAGC CGCTTGCCGC AGAGGACGTG CCCGCCCACG TGACAGGCTA G
 
Protein sequence
MPDGVPGAVS AVASATPGTE SLPSPFDILA DHLADWECWE SPEGRVHFVT PACQRISGFG 
IDNFRAHHLF IEGLIHPDDL PAWRRHREML TAGLPKAEVE IRIRTAEGGE KWLAVTSRNL
TDGHGEPLGI RSSLRDITDR KMVLSQLRHQ AWHDPLTGLP NRALCLDRLD RALGRLARGN
GELCAVVFLD LDRFKLVNDT LGNAAGDRVL RETARRLGTA TRSTDTVSRL GSDEFIILIE
DLRGEDEARA TLGRLREAQR APFDIDGRHL RVTASMGVVL ARGGNADEVL RNANIAMHHA
KEHGGDAASF FHASMLEEAL DLMQLEIDLH RALENDEFFL VYQPIVSVVD RRITGFEALL
RWRHPERGVV GPDAFIALAE HSGLIHLLGR KALDEACRTL AKWRRVDQLF DGLTMHVNLS
ARQLSQTHIV EQVAEALRDS CLPPHLLKLE VTETMLMENP DYANAVLCRL RDIGVGVCVD
DFGTGYSSLS YLQRFPIDTL KVDRSFVSRM TREPGQFKIV QAVIALAHSL GLEVVAEGVE
DEEQRIMLLG LACRYAQGFL FAKPLAAEDV PAHVTG