Gene Dvul_0116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvul_0116 
Symbol 
ID4663738 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris DP4 
KingdomBacteria 
Replicon accessionNC_008751 
Strand+ 
Start bp141219 
End bp141842 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content63% 
IMG OID639818310 
ProductTPR repeat-containing protein 
Protein accessionYP_965567 
Protein GI120601167 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones8 
Fosmid unclonability p-value0.266905 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGGCCA GATATGAAGA CCTCGACGAA TACATTGCCG ACCTGCGGGC CGAGATAGCC 
CAGAGCGAAA ACTGCGCGAA CCACCACTAC AACCTCGGTC TCGCCCTGCT TTCGAAGCGC 
GATTTCGTGG CTGCCGAGGA GTCGTTCCTC AACGCCGTGC GCAACTCACC CCGCCTTGCC 
GAGGCCTATG TGCAGCTTGG CGGCATCTGC CTCCAGCGTG GCGACCTCGA AGGCTGCCTG 
CGCTACAACG AAGAGGCCGC GCAGTCGCGT CCCAAGTTCC CCGTGGCGTG GAGCAACATC 
GGCTTCGTGC ACCTGCAGCG CGGTGAACCC GAGAAGGCCA TCGCGGCCCT CAAGAAGGCC 
CTCAAGTGGC AGCCCGACTT CATTCAGGCC ATGGCCACCA TGGGCGCGGC CTTCTACATG 
GAGGGCGACT ACGAGGCCTG CATCAACATC AGCAACGAGG CCATCAAGAA GGAGCCCTCC 
TTCGGCCCGG CCTACAACAA CCTCGCCCTC GCCTACTTCG AGCTTGGCGA CTTCGCCAAG 
TCCGTGAAGT TCGCCGACCT CGCCATGGAG AACGGCTTCG AGGTGCGCCC CGAGTTCCTG 
AAGGAGCTCG AAGCCCATCG CTAG
 
Protein sequence
MKARYEDLDE YIADLRAEIA QSENCANHHY NLGLALLSKR DFVAAEESFL NAVRNSPRLA 
EAYVQLGGIC LQRGDLEGCL RYNEEAAQSR PKFPVAWSNI GFVHLQRGEP EKAIAALKKA 
LKWQPDFIQA MATMGAAFYM EGDYEACINI SNEAIKKEPS FGPAYNNLAL AYFELGDFAK 
SVKFADLAME NGFEVRPEFL KELEAHR