Gene Dvul_3012 details

Gene Information

• Locus tag: Dvul_3012
• ID: 4662011
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris DP4
• Kingdom: Bacteria
• Replicon accession: NC_008741
• Strand: +
• Start bp: 70538
• End bp: 72382
• Gene Length: 1845 bp
• Protein Length: 614 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 639813932
• Product: sigma-54 dependent trancsriptional regulator
• Protein accession: YP_961211
• Protein GI: 120586866
• COG category: [K] Transcription; [L] Replication, recombination and repair; [T] Signal transduction mechanisms
• COG ID: [COG2901] Factor for inversion stimulation Fis, transcriptional activator; [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.344125
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACGAGA ACGACTTGCT CGACAACCTC ATCGACCTCT GCGACGACCT CGCATGGGGC 
CGCCCAGCCA GTGAAGACAG ACTCTTCGGC CTGACCGCAC CTCAGGCGTC GTTTCAGATT 
TCGGGTCAGA CGCCGGGCCA GACGCCGGGC CAGACGCCGG GGCAGGCGTC ATCAAAGGCT 
TCGGGCCAGA CATCAGTACA GACGTCATCA CAGACGCCAT CGCAAACAGC GGGGCAGTCC 
GCACCCCAGA CGCCATCACA GGCTTCGGGT CAAGGGGCGC AGCAACCGTC ACCCCAGCTG 
GCACCCCAGC CGGGAGCGGG CACCGTGCCC GAACGCTACG CCCGCCTTGC CGAGGCCTTC 
GGCATGATGC TGGTCAAGGT CGAGGCACGC GAATTCCAGC AGGCGCAGCT CATCGCCGAA 
TTGCGCGACC GCAACGAAGA ACTCGAAGAG GCGCGCCGCC TGCTGACCGA ACGCAACCAG 
CGCCTCGCCC ATACCCTGCA AGACAGCTTC CAGCCCCGGC GTCTCATCGG GCAGTGCGCC 
GCCATGCGCG CCGTGACCGA CATGGCCCTC TCCATCGCAC GGCGGCCCAT CAACACGCTC 
CTTCTCGGCC CCACCGGGGC AGGCAAGGAG GTGGTGGCGA AGCTCATCCA CTACAGTTCG 
CCACGGCGCG AGGGGCCGTT CATCGCGGTC AACTGCACCG CCATCCCCGA AGCCCTGTTC 
GAGAGCGAGA TGTTCGGCAT CGAACGCGGG GTCGCCACGG GCGTCTCGGC GCGCAAGGGT 
CTCGTGGAAG AGGCCGACGG CGGCACGCTC TTCCTCGATG AACTCGCCGA CATGCCCCTG 
CCGCATCAGG CCAAGCTGCT GCGCGTCCTC GAAGGGCGCG AGGTGGTGCG CGTGGGCAGC 
AGCCGCGCCA TACCCGTCGA CATCAAGGTC GTGGCAGCCA CCAACGCCGA CCTCGCACAG 
GCGGTGCGCG AAGGGCGCTT CCGCGAAGAC CTCTACTACC GCATCAACGT GGCAGAGGTG 
CACCTGCCGC CCCTGTGCGA ACGCGGCGAC GACATCCTGC TGCTGGCACA GCATTTTCTC 
GAACGGCACT GCGCCCAGAT GGGACGGCCC CGGCTGACCA TCTCGTTCGG CGCGCGCGAC 
CTGCTGCGCC GCTATGCGTG GCCCGGCAAC GTGCGTGAAC TGAACAACGA GATGGAACGT 
GCCGCCGCGC TCACCATCGG CGACCGTGTG GAGGTGGGCG ACCTGTCGCC CCGTATCGCC 
GGGCCCGTCG GGGCTGGCGG GTCGGGAGGC GGTGCGGGGG GCGGAACAGC CGCAGCGTCG 
GCAGGCCGGG AGACGGCATC TGCCGGGTCG GCCGGTCACG CGCCGGGCTT CACGCCGGGA 
CTCACGGCTG GCGCAGAGGG GTCCGGTGGT GCCGCAGGTG CCGGTGGTGC GCCGTGCCCT 
GCGGGGTCAC TCCCCGGCGC GGGTTCCCTG CCGGATGCCG GGGCGTTCCC GGGCGCAGGG 
TACCAGCCCC CGTCCGTTGC CAGCCCGTCG CCTGCTTTTG TCGCCGCCGT ATCCGCGGGT 
GCCGGCCAGC CCGGAATCTC CGGCGGGGCC GGAGTGCCCG GCACCACTGG CACGACTGAC 
ATGACTGGCA CCGCAGGCGA CACCGGCGCG TCCCGCGAGA CGGGTGTTGC CGGTGCCGCC 
GACCGCTTCA ACCTGCACGG ACTCGAACGC GAGACCATCC TCGCCGCCCT CGACCACGCG 
GGCGGCAACA AGAGTCGCGC CGCCGAACTT CTGGGCATCA CCCGCGAGGG GCTTCGCAAG 
AAGCTGCTGC GCTTCGCCAT CTCCGGCGGG GACGACAGGG CATGA 

 

Protein sequence

MDENDLLDNL IDLCDDLAWG RPASEDRLFG LTAPQASFQI SGQTPGQTPG QTPGQASSKA 
SGQTSVQTSS QTPSQTAGQS APQTPSQASG QGAQQPSPQL APQPGAGTVP ERYARLAEAF 
GMMLVKVEAR EFQQAQLIAE LRDRNEELEE ARRLLTERNQ RLAHTLQDSF QPRRLIGQCA 
AMRAVTDMAL SIARRPINTL LLGPTGAGKE VVAKLIHYSS PRREGPFIAV NCTAIPEALF 
ESEMFGIERG VATGVSARKG LVEEADGGTL FLDELADMPL PHQAKLLRVL EGREVVRVGS 
SRAIPVDIKV VAATNADLAQ AVREGRFRED LYYRINVAEV HLPPLCERGD DILLLAQHFL 
ERHCAQMGRP RLTISFGARD LLRRYAWPGN VRELNNEMER AAALTIGDRV EVGDLSPRIA 
GPVGAGGSGG GAGGGTAAAS AGRETASAGS AGHAPGFTPG LTAGAEGSGG AAGAGGAPCP 
AGSLPGAGSL PDAGAFPGAG YQPPSVASPS PAFVAAVSAG AGQPGISGGA GVPGTTGTTD 
MTGTAGDTGA SRETGVAGAA DRFNLHGLER ETILAALDHA GGNKSRAAEL LGITREGLRK 
KLLRFAISGG DDRA