| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_3000 |
|---|
| Symbol | |
|---|
| ID | 4661954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008741 |
|---|
| Strand | - |
|---|
| Start bp | 60703 |
|---|
| End bp | 61710 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639813920 |
|---|
| Product | type III secretion system target, YopB family |
|---|
| Protein accession | YP_961199 |
|---|
| Protein GI | 120586854 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5613] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.328389 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCC TGACCGTCGG CGGGCTCTCC GGCACCACCG GCGTGGGCGA CATCTCGCTC
GACCCCACAC CGCGGTTCCG CATCACCACC GGCGCGACGC TGCCCCCGGC CCCCGGCGGG
GCGGACGGCA CCTCGAAGGC CGACCTTCCG GTACTGGCCC CGCCCATGGG CGGTCTGGCA
CTGGAGACGC TCATGTCCGC CCTCGGCAAC GCCGAACGCA GGCAGGCGTG CAAGAACGGT
GTCGACCAGA TCAAGTCCAA GGCCGCCGAC CAGGCCAAGA TCAACGAGGA AAGGCTGGAA
CAGATCTCCA AGCGCCTTGA GGACATGCGC TCGAAGTCGG TGCTCAACGG CTTTCTGAAG
GCGTTCAAGA TCATCGGCAT GATCGTCGGC GCCATCGCCT CCATCGCCAC CACCGTCGTG
GGCGCGCTCA CCGGCAACCC CCTGCTGGTG GCTGCGGGCG TCATGGGAAT GGCCATGACC
ATCGACGCCG TCATGAGCAC GGCCTCTGAC GGCAAGATAA GTTTCATGGC GGGCATGACA
GAGCTAGGCA AAGCCATGGG CATGAGCGAA GAGGCCGCCA AATGGTTCGG CTTCGGCATG
CAGATGGCCG TGACCCTCGT CGCCGTGGGC CTCAGCCTCG GGGCGGGTTT CGCCAACGTC
AGCTCTTCCG CCGCCAACCT CAGCACCACG GCGGCGACCA AGGCCCTCGA CTTCGCCATC
AAGGCGCAGC AGATAGGCCA GTTCGTCAAC GCCGGGGTGG CCGTGGCACA GGGCAGCGGG
TCCATCGCCG GGGCCGTCAT CGACTACCGC ATCGCCTCGT CACAGGCCGA CAGCAAGGAA
CTTGAAGCGA TACTTGAACG CATCCGGGAA GCCATCGACC TTGAACACGA CTTCCTCGAG
GCGGAAATGA AACGGGCCGA AGAACTCATG GGCAAGGTGG GAGAAATCGT CAAGGATTGC
GCAGAGGCAC AGACTGCCAT CCTTGGTGGA ACCCCCGCCA TGGCCTGA
|
|---|
| Protein sequence | MSALTVGGLS GTTGVGDISL DPTPRFRITT GATLPPAPGG ADGTSKADLP VLAPPMGGLA
LETLMSALGN AERRQACKNG VDQIKSKAAD QAKINEERLE QISKRLEDMR SKSVLNGFLK
AFKIIGMIVG AIASIATTVV GALTGNPLLV AAGVMGMAMT IDAVMSTASD GKISFMAGMT
ELGKAMGMSE EAAKWFGFGM QMAVTLVAVG LSLGAGFANV SSSAANLSTT AATKALDFAI
KAQQIGQFVN AGVAVAQGSG SIAGAVIDYR IASSQADSKE LEAILERIRE AIDLEHDFLE
AEMKRAEELM GKVGEIVKDC AEAQTAILGG TPAMA
|
|---|
| |