| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_3723 |
|---|
| Symbol | |
|---|
| ID | 4656790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 4131462 |
|---|
| End bp | 4133027 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639813700 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_960979 |
|---|
| Protein GI | 120556628 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.946977 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAGG AACTGCACAC CGGCATCGAT CTGGCGGTGG CACTGATCAA ACAGGACACA
TTGCCAGCGC TGTTGAACAC CGCCACCCGC CAACTCGAAA GCGCCTTCGG GCTCAGCAAG
TGCTGGGCGC TGGAACTCGA CCTCAGCGGC CGGACCCTGC ACTGCAGCAA ACTGGACGAA
GCGGGCGAGT TTGATTGTAA CGACTTCAGC CACCCCTTTG CCCACGTGCT GCAGACAGGC
CAGCCGCGGG AACTCACCCG TGCTGCCAGT TATCGCCTGG ATCATGCCGG CTTCCAGACG
CTCCTGGAAC TCAGTGGCCG TCCAAGAAGC TTCTGGCTGG AGCCATTAAA GGGCGAAGAT
GGCCGCACCC TCGGCATGCT CGTGTTGTGC GGCGACCATC CTGACTGGCA GGGCATCGTT
ACGCAGCCAC TGTACAGCGG CCTGAAGCAA CTGCTGGTGC ATCAATGGAT CAGCCAGCTG
CAAACCCGTG ACCAGGTGTG GCAACGGCGG CTGCTCAAGC GCTCCCTGGA CCACCTGCAC
GATGCCGAAA GCCTGCGCCA GCGCTGCAGC CAGTTGGCCT ATACCCTGGT TGGCAATTCC
GAAGCCATGA CCCACCTCCG GGCCCAGGTG GTGCGAGCGG CTGGCAGCCA GCTGTCTGTG
CTGATTCAGG GCGAAACCGG TTGTGGCAAA GATGTGGTGG CCCGGGGCAT CCACGATATG
TCCGACCGTG CCAGTGGGCC TCTGGTGGTG GTCAACTGTG CCGCCATCCC GGACACCTTG
TTGGAGAGTG AACTGTTTGG TCACACCAAG GGTGCCTTCT CCGGTGCCGA CCAGGCCAAA
GAAGGTTTGC TGGCCCAGGC CAACGGCGGC ACCCTGTTTC TGGATGAGAT TGGCGATATG
CCCATGGCAC TGCAATCCAA ATTGTTGCGG GTGCTGGAAA GCCGACAGTT CCGGCCATTG
GGTGCCCGGG AAGAGCAACA TTCGGATTTC CGCCTGGTGG CGGCCACCCA TCAGCCGCTT
CAGGAGGGCA TTGAGGATGG CCGGTTCAGG CGGGACCTGT TCTACCGCCT CAGCCAGTTT
CCCCTGCGCG TTCTACCACT GCGGGAACGC AGTGAAGATC TGGAAGCGCT CAGCCGTCAC
TTCATCCGGC TCTACACCGA GCGCGAGGGC AGTGGCCCGC TGGGCATCAG CAGCCATGCC
CTGAGCGCGC TGGCCGACTA CAACTTCCCG GGCAATGTCC GGGAACTGCG CAACATCATC
GAACTGGCCT GTCTGCAGAC CCCGGCCGGT GACGACATTC AGCCGGAAGT CCTGCGCCTG
GACGATCTGT TTGCCGACTC CCCGGAGTCG ACCATGGCCT TCGTGGAAGC CAAAACCATT
CCGGGCGTAC CTCCGGCCGA TGATATCCGC GATCTGAAAG CCGCCGCCCA GGCCTTTGAG
GCCGCCATCA TCCGCGAACG TCTGCGCCAG TATGGCGGCA ATCGCGCCCA GGCCGCGGAA
AGCCTGGGCC TGCCAAAACG CACACTGGCC CATAAATGTC TGAAGTATCA GGTAACCGAC
GTATGA
|
|---|
| Protein sequence | MQKELHTGID LAVALIKQDT LPALLNTATR QLESAFGLSK CWALELDLSG RTLHCSKLDE
AGEFDCNDFS HPFAHVLQTG QPRELTRAAS YRLDHAGFQT LLELSGRPRS FWLEPLKGED
GRTLGMLVLC GDHPDWQGIV TQPLYSGLKQ LLVHQWISQL QTRDQVWQRR LLKRSLDHLH
DAESLRQRCS QLAYTLVGNS EAMTHLRAQV VRAAGSQLSV LIQGETGCGK DVVARGIHDM
SDRASGPLVV VNCAAIPDTL LESELFGHTK GAFSGADQAK EGLLAQANGG TLFLDEIGDM
PMALQSKLLR VLESRQFRPL GAREEQHSDF RLVAATHQPL QEGIEDGRFR RDLFYRLSQF
PLRVLPLRER SEDLEALSRH FIRLYTEREG SGPLGISSHA LSALADYNFP GNVRELRNII
ELACLQTPAG DDIQPEVLRL DDLFADSPES TMAFVEAKTI PGVPPADDIR DLKAAAQAFE
AAIIRERLRQ YGGNRAQAAE SLGLPKRTLA HKCLKYQVTD V
|
|---|
| |