| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_3555 |
|---|
| Symbol | |
|---|
| ID | 4655685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 3927549 |
|---|
| End bp | 3931298 |
|---|
| Gene Length | 3750 bp |
|---|
| Protein Length | 1249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639813532 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_960811 |
|---|
| Protein GI | 120556460 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCGA GAGAGCGTCG CAGCAGCCCC CGACAGCCGA TCAAACTTGC CGCTCAGATA
GATGCCGGCA GTGGTGAGGC GTGGCCCTGC CAGATTGCAG ATTTCTGTGC CGAAGGCATG
TTCATTCGTT ATTCGGGCGA AACTTCAGGC AAAATCGAAC GGGCTTTTGC TCGCGGCGGT
GTTACCGAAC TGGTGGTTCG GTTCCGGGGT CTTGAGGGCA ATCGTCGATA CGAGCTTCAT
GTCAGCCCGG TGCGGCGTAT TGACGGTGCC ATGGGCGTGC ATTTTACCCG CCCCGATTCC
GATGCCTTCA ACGCCATGCT CCAGTTGTGT GGCAGCTCCG GTGATCAGTC CCGGTCATCC
CTTCGCGCCC CCAGTGAGCG GGTTCAGTTT GTTCTTCATC AGTGTGCCAA AACGGTTACG
CGGTTTATTG AACCACTGAT GGATGCCTGT TTTGTGCAGA CGGTGGATGC CCTGCGTGTT
ACAGCCCAGA AAGCCCCCAA TGATCAGCTT GCCAATGAGT TGATGGATGC CTCCGGCCAG
ATTCAGGGGC GCCAGCGGGT GCTCTGGCAT TACATGAGCC GCAGTCTGGA ATCGCCCTTA
AAACCGGAGC CCAAAGGCGC GCCCGGTTCA GTGTTGTCGG TGGTAGACAA AAACGAGTTT
GAGGACTGGC TGGCAATTCG GGTGATGGTT ACCCGTGCTG ATACCCAGTA CCGTGGCGAC
CTGCTACAGC TCAAGCTGAG GCTGGACAAG TTAGGTATCG CCAATCGCAC CGGCCATCAT
AATCCCCTCG GTCCCGCTCT TGTGTGCGAA GCCTTCCATA ACGCGCTTGC CCAACTGAAA
GTCAGCCGGG AGGTTGAAAA GGTCTGCCTG AAGACGTTTG AGCAGACGGT GATCAAACAG
CTGGAGCCGC TGTATCGGGA GTTGAACAAT ATCCTGATCC GGCATGGTGT GTTGCCGGAT
CTGGACCTGT CCCGTTATCT GAGCGAACAG GCGCCGGCCA GGAAGGAACC GCCGACCGAG
GTGCTGAAGC GGGAGCCCGA AACACCTCTG GAAAAGCCGC AGCCTGAGGC GCCGGAAAGC
AAACCCGGGC AAACGGCCCG CGGGCTGAAA AACCGGGTAG CTGGAGAGTT CCGGGGGTAT
GCCCGCGCAG CCCAGACTGC TTTTGCCACG GTGAGGAATC TGCTGACAAC ACTGCAGGCC
AGTCGTGTGG AGAATGGAGA GGCGACGCCA GAGCCGTTTG CGGCCAATGC CCGTCCGCTG
TCTCAGGGTG AACTGCACCG GGAATTGCAG GAGCTGCAGC TACGCGCTGC GGCTCCGGAA
GAGCCGGCCG TGCCCTTGCG GGACCGGGTG GTTGAAAAGA TACGTGAAAC CGGTGACACC
CGGCTCAATG CTGAGCAGCA GGACACTCTG GACGTTGTCG ATCGGTTTTT CCGGAGCGTG
GTCGATAGCC CCAAGCTCAG TGACTACGCC CAGAGCCGAA TGCGTCAGCT GGAAGTGCCG
GTGCTGAAGG TTGTGATGCG TGATCCCGAA TTCTTTGAGG ACCAGGACAG CCCGGTTCGT
GGTGTGATGA ACCGCCTGGC ACAACTGGGC GTTAAGGGTG GCCGGCTGAA CCCGGTGGTG
CAGCGCCGGG TGGATGAGCT GATTCACCGC ATTGCTACCG AGTTCGAACA GGATACCGGT
GTGTTTGAGC AGACCGTAGG TGAGCTGGAC ACGCTGATTG ACCGGCAGAA CCTCGTGTAT
CGCCGCAACG TTGAGCGGGT GACTGCTGCC GCAGAGGGTG CCCAGAAGGT TGCCGAATCC
AAAACCGCCG TGGCCAGCGC GCTGGAAAGC AAACTGGCTG GCCGCAAGGT TCCCAGGGCC
CTGGTCAGCT TGCTTGACGG CGGCTGGCGG GATTTATTGT CGCTGACCTG GATTCGCCAG
GGACCAGACA GTCAGTTATG GCAGGACTAC CTGGCGGTGA TCGATTCGCT GATGGCTTTT
GCCGAGGACC CGGACAGCAG CATTAACCTG CCCGAACTGT TACGGCTGAT TCAGGATGGT
CTGGCGTCGA TCTCCAGCAA CCATATGCCG TCCTCCCAGA TCCGGGATGA GTTGAAGCAG
TTTTTGGTGC GTCGGCCTGA CAAGGCGCCG GAAATGGTTG AAATGCCTGC GGTCAGTGGT
GTCCGCCCGG ACAAACAGGT GCTCAGTGAG CGGGAACAAC GCAGCCTGCA ACGCTGGATC
AACCGGGCCC AGCAATTGCG CACCGGTGAC TGGCTGCGGG ATCAAACCAA GGCGGAAGAT
CCCCAGTATA TCCGCCTGGT GTGGATTGCC CGTGGTTTCA GCCGGTTTGT ATTCGTTAAT
CACCAGGGTA TGCGGGTGGT TGAGCTGGAG CTGGAAGCTC TGGCCAGACA AATGCGCAAA
GGCATCATCG TACCGGATAA TCAGTATGAT CGACCGCTGG TAGATGAGAG CATCGACCGC
ATGGTTCGCA ACGTCTATGA CCAGCTGTCC TGGGCATCCA CCCATGATGA ACTGACCCGG
CTGCTTAACC GTCGGGAATT CGAGCGTATG CTGGAACAGC AACTTGCCCG CCGGGAAGAT
AGCCGGACTT TATTGCAACT GGATCTGCGC GGGTTCCGAT TGCTGAATGA TACGGCGGGC
TACCAGGCCG GAGATGAAAC CCTGAAACGG GTGGCGGAGG TCATCTGTCG GCATGTGGGC
GATGGCATGC CGGTGGCTCG TCCCGGAGGC AATGAATTTG CCATGCTGGT GCCTGAAGAA
CAGGGGCCGG AAATTGCCAA GGCGCTCCTG GAAGCCATTG CAGATGAGCC CTTCGAGTAT
GGCGGACGGT GTTACACGTT AAATGCCAAT GTTGGTCTGG CGCCGGAACT GCCCGCGTTG
ATCAGCGCCG AAAAATGGCT GAAAGCCGCC GAACAGGCGC TCAATTCTGC CCGTGACAAG
GGCCCTGGCC GTTTCTCTAT ATACACTCTC GACGCAGACG ACCAGGCCCG GCAAGAGCAG
ATTGCAGCCC GTGTGGCTGG CCTGAGCAAC CCGGATGAAG AACGCATGCT GCTGCGTTGC
CAGAAGATCA TCCCTCTGCA CGGCAGCACC CGCATGGGGG CGCAGTATGA AATTCTGATC
AGTATGTACG ACGACAGCGG GCAGCTGATT ACCGGCCAGG ATTTCGTCCG CATGGCCGAG
CGCTATGACC GTATGCAGGC GGTGGATCGC TGGGTCGTGG GGCACATGCT GGATTGGCTA
AGGGATCAGT CACCGGATCC GCGCCATGTA GGCGGTGTCT GCATAAATCT GTCCGGCTAT
TCGTTGAACG ACCAGTCACT GCTGGAATTC ATTTACGAAA AGCTCAGTGA GAAGGATGCG
CCTATTGAGC GTCTCTGGTT CGAGCTGACG GAAGCCTCTG CCATTCATGA TCTGCAATCG
GTGGCGGATT TCATGCTGGA AATGAAAGAG CTCGGCTGCC GGTTCTGCCT GGGTAACTTT
GGCAGCGGCC CCAGTTCCTT CCAGTTCATG CGATCGTTGC CGGTAGATCT GATCAAGATC
GACAGTGCCT TTACCGGTCA GTTGGCAGCC AACCAGACGG ACCAGGCGAT GGTCAGGTCC
ATGGTTGATA TGGCTCACTA CATGGAACGG GAAGTGATTG CCTCTCAGGT TGAATCCCGT
GAGGTTCTGG ATATGCTGAG ACAACTGGGC GTGGATTACG CTCAAGGGTT TGTGGTCGAG
AAGCCCCGAC TGCTGACCAG CCTTGTCTGA
|
|---|
| Protein sequence | MDPRERRSSP RQPIKLAAQI DAGSGEAWPC QIADFCAEGM FIRYSGETSG KIERAFARGG
VTELVVRFRG LEGNRRYELH VSPVRRIDGA MGVHFTRPDS DAFNAMLQLC GSSGDQSRSS
LRAPSERVQF VLHQCAKTVT RFIEPLMDAC FVQTVDALRV TAQKAPNDQL ANELMDASGQ
IQGRQRVLWH YMSRSLESPL KPEPKGAPGS VLSVVDKNEF EDWLAIRVMV TRADTQYRGD
LLQLKLRLDK LGIANRTGHH NPLGPALVCE AFHNALAQLK VSREVEKVCL KTFEQTVIKQ
LEPLYRELNN ILIRHGVLPD LDLSRYLSEQ APARKEPPTE VLKREPETPL EKPQPEAPES
KPGQTARGLK NRVAGEFRGY ARAAQTAFAT VRNLLTTLQA SRVENGEATP EPFAANARPL
SQGELHRELQ ELQLRAAAPE EPAVPLRDRV VEKIRETGDT RLNAEQQDTL DVVDRFFRSV
VDSPKLSDYA QSRMRQLEVP VLKVVMRDPE FFEDQDSPVR GVMNRLAQLG VKGGRLNPVV
QRRVDELIHR IATEFEQDTG VFEQTVGELD TLIDRQNLVY RRNVERVTAA AEGAQKVAES
KTAVASALES KLAGRKVPRA LVSLLDGGWR DLLSLTWIRQ GPDSQLWQDY LAVIDSLMAF
AEDPDSSINL PELLRLIQDG LASISSNHMP SSQIRDELKQ FLVRRPDKAP EMVEMPAVSG
VRPDKQVLSE REQRSLQRWI NRAQQLRTGD WLRDQTKAED PQYIRLVWIA RGFSRFVFVN
HQGMRVVELE LEALARQMRK GIIVPDNQYD RPLVDESIDR MVRNVYDQLS WASTHDELTR
LLNRREFERM LEQQLARRED SRTLLQLDLR GFRLLNDTAG YQAGDETLKR VAEVICRHVG
DGMPVARPGG NEFAMLVPEE QGPEIAKALL EAIADEPFEY GGRCYTLNAN VGLAPELPAL
ISAEKWLKAA EQALNSARDK GPGRFSIYTL DADDQARQEQ IAARVAGLSN PDEERMLLRC
QKIIPLHGST RMGAQYEILI SMYDDSGQLI TGQDFVRMAE RYDRMQAVDR WVVGHMLDWL
RDQSPDPRHV GGVCINLSGY SLNDQSLLEF IYEKLSEKDA PIERLWFELT EASAIHDLQS
VADFMLEMKE LGCRFCLGNF GSGPSSFQFM RSLPVDLIKI DSAFTGQLAA NQTDQAMVRS
MVDMAHYMER EVIASQVESR EVLDMLRQLG VDYAQGFVVE KPRLLTSLV
|
|---|
| |