Gene Maqu_2279 details

Gene Information

• Locus tag: Maqu_2279
• Symbol: rimM
• ID: 4653866
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Marinobacter aquaeolei VT8
• Kingdom: Bacteria
• Replicon accession: NC_008740
• Strand: -
• Start bp: 2551997
• End bp: 2552524
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 639812253
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_959544
• Protein GI: 120555193
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0459452
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGCAGA ATTCGCAGGA AACTGTGATC GGCCGGATCA CCTCGGTGTT CGGGGTAAAG 
GGTTGGCTTA AGGTCTTCTC TTACACAGAC CCGAAAGACG GAATACTGAA CTACCGTGAC 
TGGACTCTGC TCCTGGACGG CAAGCGTATT CCGATCAGGC TTGAGGAAGG TCGCCGCCAG 
GGGCAGGGGA TCGTCGTCAG GCTTAAAGGT ATTGATGATC GTGAAGTAGC CCGCACCTAT 
TGCGGAGCGG AGATCCGGGT TCCTACCGAG CAACTGCCGG AACTGCCCGA AGGGGAGTTC 
TACTGGCATC AGCTGGAAGG TCTGGATGTC TTCACGGTAG AAGGTGAGTG CCTGGGTAAG 
GTGCATCACC TTCTGGAGAC AGGCTCCAAT GATGTCCTGG TGGTGCACGC TACGGCGGGC 
TCTATTGACC AGCGCGAGCG TCTGATTCCC TATCTGCCGG ATCAAGTGGT TCAGCAGGTA 
GATCTCAAAG GCTCTCGCAT GGTGGTTGAC TGGGATCCGG AGTTCTGA 

 

Protein sequence

MTQNSQETVI GRITSVFGVK GWLKVFSYTD PKDGILNYRD WTLLLDGKRI PIRLEEGRRQ 
GQGIVVRLKG IDDREVARTY CGAEIRVPTE QLPELPEGEF YWHQLEGLDV FTVEGECLGK 
VHHLLETGSN DVLVVHATAG SIDQRERLIP YLPDQVVQQV DLKGSRMVVD WDPEF