| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_2062 |
|---|
| Symbol | |
|---|
| ID | 4657195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 2301239 |
|---|
| End bp | 2303839 |
|---|
| Gene Length | 2601 bp |
|---|
| Protein Length | 866 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639812038 |
|---|
| Product | TRAP transporter, 4TM/12TM fusion protein |
|---|
| Protein accession | YP_959330 |
|---|
| Protein GI | 120554979 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
|---|
| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.977688 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGA ATGACCCCGG TACCGGGGCG GGAGTTGATG CCAGCAAGGT AGAACAGGTA
TTGCAGACCG AAACCGGAGG CCGGGCGCTG ACCGGGCCTG CAGCGGTTAT CCTGTTCATC
GTTCCGGTGT GCTGGTCGTT GTTCCAGCTC TGGATTGCAT CACCCCTGCC GTTCATTCTG
AATTTCGGAA TATTCAATTC CACCGAAGCG CGCTCAATCC ATCTGGCGTT TGCGGTGTTT
CTTGCATTCT CGGCATTCCC GATGATCAAA GGGGTGCATG CCAACAAGGT GCCCATATAT
GACTGGGTGT TGGCTTTGGC TGCTGCATTT GCGGCTTCCT ATCTTTATGT TTTTTATGAT
GCTCTTTCGC AGAGGCCGGG GGCACCAACC ACCATGGATC TCTGGGTGGC GTTGGGCGGC
CTGGTATTGC TGCTGGAAGC TACCCGGAGG GCCCTTGGGC TCCCGCTGAC TGTTGTTGCG
GCGGTATTTA TTGCCTACTC ACTGGCCGGC CCTTACATGC CGGATGTGAT TTCTCATAAA
GGCGTGAGCC TGAACAAGCT GGCTTCCCAC CAATGGCTCG GAACCGAGGG GGTATTCGGG
GTTGCTCTTG GGGTGTCTAC CAGCTTTGTT TTCCTGTTTG TGTTGTTCGG TGCCTTGCTT
GAGCGGGCGG GAGCCGGTAA CTACTTTATC AAGGTGGCTT ACGCCATGCT GGGGCATATG
CGCGGAGGCC CGGCCAAGGC GGCGGTGGTT TCCAGTGGCC TGAGTGGAGT GATTTCCGGA
TCCTCCATCG CCAATGTGGT GACCACCGGT ACCTTCACGA TCCCCCTGAT GAAACGGGTC
GGTTTCCCGG CAACCAAAGC CGGCGCGGTT GAAGTGGCTG CGTCCACCAA CGGTCAGCTT
ACCCCGCCCA TCATGGGTGC CGCGGCCTTC CTGATGGTCG AGTACGTGGG GATTTCCTAT
CTCGAGGTGA TCAAGCACGC CATTCTGCCG GCACTGATTT CCTATGTTGC CCTGATTTAC
ATCGTCCATC TGGAAGCCTG CAAGCTGAAG ATGGAAGGGG TAGAGCGGCT GAATCGTCCA
ACCCTGGCCC AGCGCATGCT GAACTGGGTG GTCATTCTGA TTGGCCTGAT CGTACTGACC
TTCGCGGTTT ATTACGGGGT TGGCTGGACC AAAGGGGTGT TGGGTGAGGC CGCGCCCTGG
GTGCTTGGGC CGATTCTGGT GATGATTTAT GTCGGCCTGG TAGGTTATGC CACCCGCTTC
CCGGAGCTGG AGGAAGACGA TCCCAATAAA GAAATGAACG AGTTGCCAGA GGTAGGCCCC
ACCGTTAAAA CCGGACTCTA TTATCTGCTG CCGGTGGTGG TGCTGGTCTG GTGTCTGACG
GTTGAACGCT TTTCGCCCCA GCTGTCTGCC TTCTGGGCGA CCTTGTTCAT GATCTTTATC
GTTATTACCC AGCGGCCGCT GAAGGCCTTT TTCCGCAAGC ATGGCGGATT GATGTCTGAA
TTCACCGGCG GCATCAGTGA TTTGTTCCAT TCGCTGGCGA CCGGCGCCAG GAACATGGTG
GGTATCGGCG TTGCGACAGC AACGGCCGGC ATCGTAGTTG GTACGGTGAC GCTGACCGGT
ATCGGCCTGG TGATGACTCA GTTCGTGGAA TTCCTGTCTG GCGGAAATCT GCTGCTGATG
CTCATCTTCA CTGCTGTGAT CAGTCTGATT CTGGGGATGG GATTGCCGAC AACCGCCAAC
TACATTGTGG TTTCCACCTT GATGGCGCCG GTTATTGTAA CCCTGGGGGC CCAGAATGGC
CTGATCGTTC CGCTGATTGC GGTGCACCTG TTCGTGTTCT ATTTCGGGAT ACTGGCGGAT
GATACGCCGC CCGTGGGGTT GGCCGCCTAC GCGGCGGCCG CAATCTCAGG GGCAGACCCG
ATCCGAACGG GTGTCCAGGG TTTTACCTAC GATATTCGAA CCGCCATCCT GCCGTTCATG
TTCATCTTCA ATACGCAGCT GTTGTTGATT GGCCTGACTG GCTGGTTTGA TCTGCTGGTT
ACGGTGTTCA GTGCCGTCAC GGCCATGCTG GTGTTCTCGG CGGCAACCCA GGGCTTCTGG
TTCACCCGGA GCCGGAAGTG GGAAACCCTG TTGTTGTTGC TGATTACCTT TACCATGTTC
CGGCCCGGTT TCTGGTGGGA CATGATCTAT CCGCCGAACG AAGAACGGCC GGGGACAGCC
GTTATGGAAT ACGTGGCGGA TGTGCCTGCT GACGGTGAGG TGGTGCTGAA GGTGTCAGGC
ATGGCGCTGG ATGGCAGTGA TGTCACCACC TACGTCGAGC TTGAGATCCC TGAAGGTGAA
ACCGCGCAGG AGCGCCTGGC GGGTGCAGGA CTGGAAGTGT CAGAGCAGGG CGGTGATCTG
GTGGTGGATT TCGTCAACTT TGGCAGTGCC GCGGAAGATG CCGGTATCCA GTTTGGCTGG
ACCATTGATG CAGTCCAGAT TGAGCTGGAG CGGCCACCAA AAGAGTTGAT GTTTATCCCG
GCACTGTTAC TGTTGGGCCT GGTCGCTTTC GGACAGCTCA GGCGCAAGGC ACGGGAGGAT
GCTCAACCCC AGCCGGCCTG A
|
|---|
| Protein sequence | MAKNDPGTGA GVDASKVEQV LQTETGGRAL TGPAAVILFI VPVCWSLFQL WIASPLPFIL
NFGIFNSTEA RSIHLAFAVF LAFSAFPMIK GVHANKVPIY DWVLALAAAF AASYLYVFYD
ALSQRPGAPT TMDLWVALGG LVLLLEATRR ALGLPLTVVA AVFIAYSLAG PYMPDVISHK
GVSLNKLASH QWLGTEGVFG VALGVSTSFV FLFVLFGALL ERAGAGNYFI KVAYAMLGHM
RGGPAKAAVV SSGLSGVISG SSIANVVTTG TFTIPLMKRV GFPATKAGAV EVAASTNGQL
TPPIMGAAAF LMVEYVGISY LEVIKHAILP ALISYVALIY IVHLEACKLK MEGVERLNRP
TLAQRMLNWV VILIGLIVLT FAVYYGVGWT KGVLGEAAPW VLGPILVMIY VGLVGYATRF
PELEEDDPNK EMNELPEVGP TVKTGLYYLL PVVVLVWCLT VERFSPQLSA FWATLFMIFI
VITQRPLKAF FRKHGGLMSE FTGGISDLFH SLATGARNMV GIGVATATAG IVVGTVTLTG
IGLVMTQFVE FLSGGNLLLM LIFTAVISLI LGMGLPTTAN YIVVSTLMAP VIVTLGAQNG
LIVPLIAVHL FVFYFGILAD DTPPVGLAAY AAAAISGADP IRTGVQGFTY DIRTAILPFM
FIFNTQLLLI GLTGWFDLLV TVFSAVTAML VFSAATQGFW FTRSRKWETL LLLLITFTMF
RPGFWWDMIY PPNEERPGTA VMEYVADVPA DGEVVLKVSG MALDGSDVTT YVELEIPEGE
TAQERLAGAG LEVSEQGGDL VVDFVNFGSA AEDAGIQFGW TIDAVQIELE RPPKELMFIP
ALLLLGLVAF GQLRRKARED AQPQPA
|
|---|
| |