| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_1933 |
|---|
| Symbol | |
|---|
| ID | 4656467 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | + |
|---|
| Start bp | 2156439 |
|---|
| End bp | 2159960 |
|---|
| Gene Length | 3522 bp |
|---|
| Protein Length | 1173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639811904 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_959201 |
|---|
| Protein GI | 120554850 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.436616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAG GCCAGGCCCA CGCCCCGCTT ATCGCCCCCG CTGCCCCTGA AAAGGCTGCC
GACCACAGAA AATGGGGGCA ACTGAATGGC TGTGCCGACG CCCTGGCCAT CTGCGAAAGC
GCCCGCGCCC ACAAAGGTCT GACACTGGTC ATCACTCAAA GTACCAGCGA AGCCATCCAG
CTGGAGCAAT CCATCCGGTT TTTCCTGGGG CTGCCCACGG ATGAAGACGG CGCCATCATT
ACCTCCGATG GCATTGAGCT ATTGTCGCTT CCGGACTGGG AAACACTGCC CTACGATCTG
TTTTCGCCAC ACCAGGACAT TACCTCGAGG CGGATTCGCT CCCTGCACCG GTTACCCGGC
ACACGCCACG GCATTCTCGT AGTACCGGCG CGCACCCTGA TGCACCGGCT TGCCCCCCCG
AGCTATCTGC AGGGCAACAC CCTGCTGCTG GAAGTGGGCC AGACCCTGGA TATCGACAGC
TGGCGAATGC AACTGGAGGC AGCCGGTTAT CATCATACCG ACAACGTGTA TGAACACGGC
GAGTATGCGG TACGAGGGGC CATCCTCGAC ATTTATCCCA TGGGCTCTAA CCTGCCCTAC
CGCATTGATC TGTTCGATGA CGAAATCGAA ACCCTCCGGA CCTTTGACCC GGAAACCCAG
AGATCCATCG ATAAAACCGA ACGCATCGAA CTTCTGCCGG CCAACGAATT TCCCTGGCAC
AAGGAAGCCC GCTCAGGCTT TCGCAATCGC TGGTTTGAAT ATTTCCCCAA TGCCGACAAA
GACGCGCCGG TTTACCAGGA TGTTACCCAC GGCATCACAC CGCCTGGCAT TGAGTACTAT
CTTCCACTGT TTTTCGATGC AACCGCCACG TTATTTGATT ATCTGCCGGG CAACACTCTG
GTGTTTACTG CCAACGGCCT CAATGATGCC GTCAATGCCT TTGATGCGGA AACGCGGGCC
CGTTACGAAG ACCGCCGCCA CGATCGACTG CGCCCTATTC TGCCCCCCAC CGAGCTGTTT
CTGCAGCCGG ATGAAGTGTT CGGGCAACTC AAACACCACC CGCGCATTAC CTGCAGCAGT
CAGCCCGAAG ACGGCGCGGG TGCCAGCAAC TGCGGTACCG AATCTCTCCC GGATGTCGCC
ATGGACGGGC GCGCCGCTGA TCCGGCAGGG CGCCTCAAAC GGTTCATCCA GGAGTTCCAC
GGGCGCATCC TGATCTGTGC TGAATCGTCC GGGCGCCGGG AGGCGCTGAT CGACAACCTG
GCCGATCACA AGCTCAAGCT GGCAACCGTG CAGAGCTGGT CGGAATTCCT CGAAAACGAG
AGCACCACTC TGGCCATCAC CATTGCCCCA CTGGAACAGG GCATGGTATT GCCCGACCAG
AATCTGGCAC TGATTACCGA AACGGCGTTG TTTGGCGAGC GGGTGCTGCA GCGTCGCCGG
CGCCAGAAAC CAACCGAAAC CGACGATGCC GGCTACCGGG ACCTGTCTGA ACTGAGAATT
GGCGCACCGG TCGTGCATAT CGACCATGGC GTGGGGCGCT ACAAGGGGCT GGAGACACTC
ACCGCCGGCG GCCAATCCGA CGAATTTCTG ACCCTGGAAT ACGCCGGCGG CTCCAAACTC
TATGTACCGG TGTCCAGCCT GCACCTGATT TCCCGTTACG CCGGCACCGA TGAGGAACAC
GCACCGCTCC ACAAGCTCGG AACGGAGCGC TGGAGCAACG CCAAGCAAAA AGCGCTGGAA
AAGATCCGCG ACACCGCAGC AGAACTGCTG GATGTTTACG CCCGCCGGGA AGCCCGGAAA
GGCTTCCAGT TTGAAGACCC GAAAGAGGCC TATCGGGCCT TTGCTGCCGG ATTCCCGTTC
GAGGAGACGC CGGACCAGCA GGTGGCCATC GAATCGGTGT TCGAGGATAT GACCAGCGAA
CGCCCGATGG ACCGACTGGT ATGCGGCGAT GTCGGCTTCG GTAAAACCGA AGTCGCCATG
CGCGCAGCTT TTCTGGCCAC CTGGTCTGGC AAACAGGTGG CCGTTCTGGT ACCCACTACT
CTTCTGGCCC AGCAACATTA CGAGTCGTTC CGTGACCGGT TCTCGGATAC GCCGGTAACT
GTAGAGCTTC TGAGTCGCTT CCGCAGCGGC AGCCAGACCA GCAAGGCCAT CACTGCCATA
GAGGAAGGCA AGGCAGATAT CGTCATTGGC ACCCACAAGC TTCTGCAAGG CGATATCAAC
TTCAAGAATC TGGGGCTGGT GATTATCGAC GAAGAACACC GGTTTGGCGT TCAGCAGAAG
GAAAAACTGA AATCCCTGCG GGCCGAGGTG GATATGCTGA CCCTCACCGC CACACCGATT
CCCAGAACCC TGAACATGGC CATGGGCCAC CTGCGCGACC TGTCCATTAT CGCCACCCCA
CCAGCCCGCC GGCTGTCGGT GAAAACCTTT GTGCGCCAGC GCGACGACGC CATGGTGAAA
GAAGCGATTC TGCGGGAAAT CCTGCGGGGC GGTCAGGTCT ATTTCCTGCA CAACGATGTC
GCCACCATCG AGAAAACCGC GGAAGATCTG CGCAAACTGA TTCCGGAGGC GCGGGTGGGT
GTGGCACACG GCCAGATGCG CGAGCGCCAG CTGGAACAGA TCATGTCGGA TTTCTACCAC
AAGCGTTTCA ACGTACTGGT GTGCACCACT ATTGTGGAAA CCGGCATCGA CATCCCCAGC
GCCAACACCA TTATTATTGA ACGGGCAGAC AAATTTGGCC TGGCGCAGCT GCACCAGCTT
CGGGGTCGCG TGGGCAGGTC TCATCACCAG GCGTACGCCT ATCTGCTGAC ACCACCGCCA
AAGGCCATTT CCGCCGATGC CAGGAAGCGA CTGGATGCGA TTTCCGAATC CCAGGACCTG
GGCGCAGGCT TCATGCTGGC CACCCACGAC CTGGAAATCC GGGGCGCTGG CGAGCTGCTG
GGTGAAGAAC AGAGCGGTCA GATCGAAAGC ATCGGCTTTA CCCTCTACAT GCAGCTGCTG
GACGAAGCCG TAAAAGCGAT TCGCGACGGC CGCACGCCCA ACGCCGAGCT GCCTCTCAGC
CACGGCACCG AAATGAACCT GCGCATTCCG GCCCTGATTC CCGACGACTA CCTGCCAGAT
GTCCACAACC GCCTGATGCT GTACAAGCGT ATTGCCAGCG TGAAGGATCG TGAGGCATTA
AAAGAACTTC AGGTTGAGAT GATTGACCGC TTCGGATTAT TACCGCCCCC GGCCAAGAAC
CTCATGCGCC AGGCACAGCT ACGCTTGCAG GCAGAGACTC TGGGCATCGT GAAAGTGGAT
GCCGGCAAGG AATGGGTGCG GCTTGAGTTC GGGGCAACGA CACCGGTCGA CCCTCTCGAA
CTGGTTAAAA AAGTGCAATC CGCTCCGGAT CGATACCGGC TCGAAGGCGC CAACAGCTTT
CGCTTCCGGC TGAATGATGA CTCAACCGAT GGTAAACTCG ACGCCATCGC AGCGATGCTC
GAAGAACTGG CGCCCGACAA GGCCCCGGCA AAGGCATCAT GA
|
|---|
| Protein sequence | MTKGQAHAPL IAPAAPEKAA DHRKWGQLNG CADALAICES ARAHKGLTLV ITQSTSEAIQ
LEQSIRFFLG LPTDEDGAII TSDGIELLSL PDWETLPYDL FSPHQDITSR RIRSLHRLPG
TRHGILVVPA RTLMHRLAPP SYLQGNTLLL EVGQTLDIDS WRMQLEAAGY HHTDNVYEHG
EYAVRGAILD IYPMGSNLPY RIDLFDDEIE TLRTFDPETQ RSIDKTERIE LLPANEFPWH
KEARSGFRNR WFEYFPNADK DAPVYQDVTH GITPPGIEYY LPLFFDATAT LFDYLPGNTL
VFTANGLNDA VNAFDAETRA RYEDRRHDRL RPILPPTELF LQPDEVFGQL KHHPRITCSS
QPEDGAGASN CGTESLPDVA MDGRAADPAG RLKRFIQEFH GRILICAESS GRREALIDNL
ADHKLKLATV QSWSEFLENE STTLAITIAP LEQGMVLPDQ NLALITETAL FGERVLQRRR
RQKPTETDDA GYRDLSELRI GAPVVHIDHG VGRYKGLETL TAGGQSDEFL TLEYAGGSKL
YVPVSSLHLI SRYAGTDEEH APLHKLGTER WSNAKQKALE KIRDTAAELL DVYARREARK
GFQFEDPKEA YRAFAAGFPF EETPDQQVAI ESVFEDMTSE RPMDRLVCGD VGFGKTEVAM
RAAFLATWSG KQVAVLVPTT LLAQQHYESF RDRFSDTPVT VELLSRFRSG SQTSKAITAI
EEGKADIVIG THKLLQGDIN FKNLGLVIID EEHRFGVQQK EKLKSLRAEV DMLTLTATPI
PRTLNMAMGH LRDLSIIATP PARRLSVKTF VRQRDDAMVK EAILREILRG GQVYFLHNDV
ATIEKTAEDL RKLIPEARVG VAHGQMRERQ LEQIMSDFYH KRFNVLVCTT IVETGIDIPS
ANTIIIERAD KFGLAQLHQL RGRVGRSHHQ AYAYLLTPPP KAISADARKR LDAISESQDL
GAGFMLATHD LEIRGAGELL GEEQSGQIES IGFTLYMQLL DEAVKAIRDG RTPNAELPLS
HGTEMNLRIP ALIPDDYLPD VHNRLMLYKR IASVKDREAL KELQVEMIDR FGLLPPPAKN
LMRQAQLRLQ AETLGIVKVD AGKEWVRLEF GATTPVDPLE LVKKVQSAPD RYRLEGANSF
RFRLNDDSTD GKLDAIAAML EELAPDKAPA KAS
|
|---|
| |