| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_1620 |
|---|
| Symbol | |
|---|
| ID | 4657090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | + |
|---|
| Start bp | 1815743 |
|---|
| End bp | 1818445 |
|---|
| Gene Length | 2703 bp |
|---|
| Protein Length | 900 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639811585 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_958891 |
|---|
| Protein GI | 120554540 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAA GAACTATTGC GCGTGCATCA CTGCTATCCG CTGCCATCGC TTTGGCCGTG
ACGGGGTGCA ACAGCGAACC GGACATGTCT CAGGAAGACA TTCAGTACAT CAGCCATGTA
GACCAGGCAC GGTTTTTCCA GCGCCAGGGT GAGCTGAAAG CAAGCACCAT CGAGGCCAGA
AGCGCCATCG ATCTCCAGCC GAATCGCACC GCCCCCTACT TTGTCATCAT CCACAACCTG
CTTACTGCCG GTGATGCGGC GAACGCTGAA CGGCAACTGG ACAAACTCCT TGAAAACACC
AACATCGAGG AGCTGGGCCA ATCGGAACGC AACCAGGCTG CGTTGATCCG GGCTGAAGCC
CGTATTCTCC AGGGTAAACA CCAGGAAGCC CTGGAATCTC TGGACCAGAT TTCATCGCCC
TCTCCGGATC AACAGTTGCA GGCAGACAAC CTGAAAGGTC GCGCCTGGTT GACCAGCGGC
GACTTTGACA AAGCCGAAGA GGCCTACCAG AGCGCGTTCG ACAAACACAG CAATAACGTT
GTTGCCATGG TCGGCCTGTC CCGGGTTGCC ACGGCCAAGG GCGACTTCGA CACTGCAAAG
GAACGCCTTG AGAAAGCCAT AGAAATTGAC GCTGAACACG AGGACGTCTG GCTCTGGAGA
GCGCAATTCG CCCATGCCCA ACAACAATGG GCCGAAGCAG AACAGGCGTA CATACGCGCA
CTGGAGACCA TCGGCCAGTT CGACGTTATG ACCTTCCGGA AATACCAGAC CATTTCGGCC
TTGATCACCG TTTTGCGTGA GCAGGGCAAA TCGGCGGAGG CATTTGTCTA CGAGGAAATC
CTTGCCAAGT CCGGCCCGGG TACGATCAAA AGCAACCTGG AAGCCGCGGC CTCAGCCTAT
AATGATGGCG ACCTGAATAC CGCCGCCAGG TATCTGCAGG AAGTCCTTAA CCAGGTTCCC
AACCATCAAC AAAGCGCATT GATGCTGGGC GTAATACGTT ATCGGCAAGG CCGCCCCGAG
GAGGCTGAGA AACTGCTTGC ACCGCTGGCC GATATGGAAA ACGCCGATGA AGTACGCAAA
CTCCTGGCCG CCACCCGCAT ATCCATGCGC GACCCGGCTG GCGCAAAATC ACTGCTGGAA
GACCTGGAGG GCAGCGACGC CGATCCACAA ACACTGGCAC TGGTAGGCAT TGCAAGCCTG
GCTTCTGGCG ATGACCAGAG TGGCCGCCAG CTCCTGGAAA AGTCGCTGGA ACTGGCACCA
GACAACCACA ACCTGCGTTT GCGCTATGCG GCTTACCTCA CTCAAACCCG AGATTTCGCC
AATGCCATCA AACAGGCCAG ACAGATTCCG TCGGATGCCA CGGAGGCCCT GCAGGCGACA
ATCCTGACAT CCCAGGCCCA GGCTTTGTCT GGCAATTCGC AGACGGCAAC AGACACCCTG
GACACCTGGC TTAAAGCCAA TCCGGACAGC ATGGCGGCTT TGATCGCCCG CGGAAACCTG
GCCAGCAGCC TGAACAACAC GCAACAGGCG GCCAGCTACT TTGAGCGGGC GCATAAGCAA
CACCCGGAAG AAGCAGCCCC TCTGGTAGCT CTGGGCAACC TTGCTCGCGA ACAGCAAAAC
ACGGAGCAGG CGATTGCCTG GTACCGCCAG GCGGTCGAAA CCAACCCGAA CAACCTGCCC
GCCATTCAGG CCCTTGCCGG TGTGATGAAG CGCGATCAAC TGACCGGGCT GATGCAGGAA
ATCAGCAGCA AACATCCTGA GGCAAACGGA CCGCGGCTGA TCCTTCTGGA ATCCGCGCTG
ATCAACAACG ATACGTTGCA AGCCGATGAA CTGACCGCCC GGTTGATGGA AAGAGAGCGG
GAAGACCAGC CCTCACCGGC TGAACCGCTG GTCGCTGCGG TATATGAAGG CATTGCCACT
CAAATGGCAC AGCGCGAAAA CAGCGAGCGC GCTCTGGAGA TCCTGAGCCG CGGACGAACG
CTCTTCCCTG AGAACGAGGC CATCGCCCTA AAAGTGGCTG CCATCGAATT CAGCAATGGC
AACGCAACCG CCGCGCGCAG CGCGCTGCAG GATGCCAAGC AGCATCACCC GGACTCCCCC
GCGCCCTACC AGGTAGAAGC CAGCTATTAC GAGAACCAGG GCGAACATCA GCAAGCTGCT
GAGCTTTATC AACTGGCGCT GGCCAAGCGA CAAACGGCGG AACTGGCCAT CGCCCATGCT
CGCGCACTCT CTAACGCCGG CCGATCTCAG AATTCGATAG AAGCACTGCA GGAAGCCAAC
AAACAATTCC CGAACAATTC GTCAATTCTG CTTACACTGG CGCTTCAAAC CCAGCAAGCA
GGCCAGACGG ATGCGGCCAT TGAGCACTAC CAGCAGGTTC TGCAACTGAC CCCGGACAAC
GCCCTGGCGC TGAACAATCT CGCCTGGCTG TATTACGAGG CCGGCAACAG CGAAGCGGCA
TCACTGGCCA AACGCGCCTA CGAACTGGTG CCCGAAAATG CTGCGATTGC AGATACCTAC
GGCTGGATCC TGTTCGAGGC TGGTGAACAC GAGCAAAGCC TGGCGGTACT GGAAAGAGCC
CATTCCCTGG CACCGGATTC CCAGGAAATT GCCATGCATC TGGCCGAAGC TTATCGAGCC
ACCGGCCGCA CGGATGCGGC CCAGCAGATC ATGGACAAGT TCAGCACAGG CAACAACGGC
TAA
|
|---|
| Protein sequence | MKIRTIARAS LLSAAIALAV TGCNSEPDMS QEDIQYISHV DQARFFQRQG ELKASTIEAR
SAIDLQPNRT APYFVIIHNL LTAGDAANAE RQLDKLLENT NIEELGQSER NQAALIRAEA
RILQGKHQEA LESLDQISSP SPDQQLQADN LKGRAWLTSG DFDKAEEAYQ SAFDKHSNNV
VAMVGLSRVA TAKGDFDTAK ERLEKAIEID AEHEDVWLWR AQFAHAQQQW AEAEQAYIRA
LETIGQFDVM TFRKYQTISA LITVLREQGK SAEAFVYEEI LAKSGPGTIK SNLEAAASAY
NDGDLNTAAR YLQEVLNQVP NHQQSALMLG VIRYRQGRPE EAEKLLAPLA DMENADEVRK
LLAATRISMR DPAGAKSLLE DLEGSDADPQ TLALVGIASL ASGDDQSGRQ LLEKSLELAP
DNHNLRLRYA AYLTQTRDFA NAIKQARQIP SDATEALQAT ILTSQAQALS GNSQTATDTL
DTWLKANPDS MAALIARGNL ASSLNNTQQA ASYFERAHKQ HPEEAAPLVA LGNLAREQQN
TEQAIAWYRQ AVETNPNNLP AIQALAGVMK RDQLTGLMQE ISSKHPEANG PRLILLESAL
INNDTLQADE LTARLMERER EDQPSPAEPL VAAVYEGIAT QMAQRENSER ALEILSRGRT
LFPENEAIAL KVAAIEFSNG NATAARSALQ DAKQHHPDSP APYQVEASYY ENQGEHQQAA
ELYQLALAKR QTAELAIAHA RALSNAGRSQ NSIEALQEAN KQFPNNSSIL LTLALQTQQA
GQTDAAIEHY QQVLQLTPDN ALALNNLAWL YYEAGNSEAA SLAKRAYELV PENAAIADTY
GWILFEAGEH EQSLAVLERA HSLAPDSQEI AMHLAEAYRA TGRTDAAQQI MDKFSTGNNG
|
|---|
| |