| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_1561 |
|---|
| Symbol | |
|---|
| ID | 4656626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 1744422 |
|---|
| End bp | 1747595 |
|---|
| Gene Length | 3174 bp |
|---|
| Protein Length | 1057 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639811526 |
|---|
| Product | tetratricopeptide TPR_4 |
|---|
| Protein accession | YP_958832 |
|---|
| Protein GI | 120554481 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTAC GCAAGCTTGC GGTTGCCCTG GCGCTGGCGG GAGGGCTCGG CTCTGGAATG
GCTCAGGCGC TTGGACTTGG AGAAATTGAG CTCCAGTCCT GGCTGAATGA GCCACTGGAT
GCAGAAATAT CACTGAATCA GAGTCGCGGT GTTGATCCCG GTGAAGTGTT CGTCAATGTG
GCACCGGAGG CCGCCTATGA GCGCGTCGGC CTGGACCGCC ACCAGTTTCT GAGTCAATTA
AGGTTTGAAG TGGTTACCGG GACGGATGGC AACCTGGCCA TCAATGTTTC CTCCCGGGCG
CCGGTACGCG AGCCGTATCT GAATTTCCTC CTCGAGCTGA CCTGGCCCAA TGGTCGCCTG
ATGCGGGAAT ATGCCGTGCT GGTCGATCCT CCGGTCTACG CCGAGGAATC TGGTATTGAG
GAGCAAATCA GTGCTCCGGC CACGACAGCC ACCCGACAGC AGCCGGCGCG CAGCCAGGAA
TCTGTCCGCC GTCAGGCGGC AGCCGAAGGC TCAGTGTCGC GGGGCTATCA GGCAGATACG
TTTGGTCCGA CAGGTGCCTC CGACACACTC TGGACTATTG CCCAGCAGGT ACGTCCGGAT
GGTTCGGTTT CCATGCAGCA GGTCATGCTC GCGATTCAGG ATCAGAATCC TAACGCGTTC
ATTGGTGGGA ATATTAACCG CCTGAAGCGT GGTGAGGTGT TGCGGATTCC CTCTCTGGAT
CAGATTCGGA GCCGTAGCCG CGCTGAAGCC AACCGGGTAG TTGCACAGCA GAACCAGGAA
TTCCAGTCTC CGAGAACCGT TGATGGAACG GATACCGCCC AGGCCGTAGC AGGCCAGGGC
GCTACTCAGG CGGCAGCGGG TGATGAGTTG CGCCTGCTGG TTGCCGATGA ATCGGAATCC
CGGTCTACCG AAGACGGTGG TTCTGCCGGT GGTGATGGTG ATCTGCCTGG CGGTGTTGAT
GCCGGTTCCG CAGTTGCGAT GGAAGAGCTG GAAGCCGCAA AACGCGAAAA TGACGAGCTC
AATACCCGTG TCCAGGATCT GCAGGACCAG GTTGAGACCC TGCAGCGGTT GCTGGAGCTG
AAGAACAGCC AGCTGGCGGA CATGCAGGGT ATGGTGTCGG AGGAAGAGTC TCCGGCCCCG
ACCGACACTG GCGTGACCGA GTCTGACGCT GACCCGGCGA CAGCACCTGT AGAAGGTGAT
CTGGGTGCCG GCACCGGCGA AGAACCGGTA GCAGACGGCC AGGTTGATGA AGCCGCTGAT
GGTGAATCGG CCGACACAGC GATGGCGGAA GAAGAGAGCG CCATGGCCCC GGACGAAGCA
GATATTGCAG GTGAAGAGCC GTTTGGTGGT GATGTCGACG CGGGCGCTGC GGATGAGGTG
GTGGCAGAGC AGCCTGCGGT TACCGAGCAG GAATCATCAT CTGAACCTGA ACCAGCGGCC
GTCCCCCAGG CCCAGCAGCC AAAACCGCAG CAGCCAGTAA CGGCGCCTGA AAAGGCATTT
CCGGGTAACG TTATTGACGG TATTCTGAAC AATCCGATGT ATCAGATTGC CCTCGGTGGT
GGCCTTATCC TTCTGCTTCT GTTGTTGCTG CTCGTGGCAA GACGCAATGC CAATCGCGAG
AAAGAGTTCT ACGACCAGTT GAACAGTGAT GAGGGCGAAG GCGGTGATTC GTTCGACCTC
AGTCTCGAAG ATGAGGGTGA GGCAGAGGCG GAAGCCGGTG ATGCCATTGC CGAAGCAGAA
ACCTATGTTG CCTACGGTCG TCACGATCAG GCAGCCCAGG TGCTCGAAAA CGCCATTTCA
CGTGAGCCCA GCCGCACTGA TTTGCGCCTG AAGCTGTTGT CTGTATATGC GGACAATCAG
GATCGTGACG CGTTTGAAAA GCAGTACCGT GAAGTTGAAG CGCTGGATGA TGAGGCAGCT
ATCCAGGAAG CTGAATCCCT CCGGGAGCGC CTTGCTGAAG CTGAAGCGAT GCCCAGCATC
GACGACCTTG AATCTCAACT GCGTTCGGAT TCGTTCGGCA GTCAGCCTGA GCAAGAGCCA
GCCACCGAGC AGGCTTCGGA TGACTGGGAT ATCTCCGACG AGCTGAAAGC GGACGAATTT
GAAGCCACTT CAGGGCCCGC TGACGAAAAT GAGTTCGGTG AGCTGGAATC CGATGTCAGC
AAAGAATCCG ATGGCCGGGA TGACATGATT GAGTACGATC TGTCCGGCAT TGGTGAAGAA
TCGGAGTCTG AAGACGAGTC CGCCACCGAA ACCGATTACG CTTCCCTGGA TCTGGATTCC
GGTCTGGATG AGGCAACCGG GACTTCCGAA TCCAAAGAAG ATGACTTCAG TCTGGATTTC
GAGTCGGCCT TTGAAGACGA CGCGCTCGCC GGTTCAGATG AGCCCTCCTT GGAATCCGAT
GAAGCGGAGC CGGTTGAGGC GGATCTGTCT GGTACCGGTT CGGATCAGGA AGACGATCTT
GAGCTGGGCT TCGATCTTGA TGACGACCTT GAGTCGACGG AAGAAGAGCC AGTTAAGCAG
GAAGACACCG AAGTATCGGA TCTGGACCTG GAGTCTGATT CGCTTGACGA GTCCTTCCTG
GACGAGCTTG ATGCGGAGCT GGATAAGGTT GCAGGCGAGG ACGATGAGCC TTCTGAACTG
GAGCTTGGAG AATCCGATCT GGATGACCTG GAGCTGGATG TATCTGATGA AGATCTGGCG
CTGATGGAAG AGTTCTCTGA TAACGGAGAA CCTGCAGGTC CTCAGGAAGA CGAACCATCC
CTGGAAGATG AGCTTGGGCT GGAAGATGCA CTCAGCGAAT CCGAGGCTGA TGAGCCGGGC
GTTGACCAGC AGAATCCGGA AGAGCTGGCG GAGCAGACAG AAGAGGTTGC TGAGGCCGAA
CCGGCTCCTG AAGAGCTGGA GGACGAAGTA GTGCCTGTGG CGTCAGACTC ACTCGATGAA
GGCTCCACTC GCAGTGATAG CGGGTTGGAT ATTGATGAGA GCGCTCTGGA CGACGAGGAT
GACTTTGACT TCCTCGCCGG TACCGATGAA GCCGCCACCA AACTTGATCT GGCACGAGCC
TACATCGAAA TGGGTGACAG CGACGGTGCC AGGGATATTC TGGAGGAAGT TGCTCTTGAG
GGTAACGAAG AACAGAAGGC AGAAGCACAA GAGCTTCTTA AAAATCTCTC CTGA
|
|---|
| Protein sequence | MKVRKLAVAL ALAGGLGSGM AQALGLGEIE LQSWLNEPLD AEISLNQSRG VDPGEVFVNV
APEAAYERVG LDRHQFLSQL RFEVVTGTDG NLAINVSSRA PVREPYLNFL LELTWPNGRL
MREYAVLVDP PVYAEESGIE EQISAPATTA TRQQPARSQE SVRRQAAAEG SVSRGYQADT
FGPTGASDTL WTIAQQVRPD GSVSMQQVML AIQDQNPNAF IGGNINRLKR GEVLRIPSLD
QIRSRSRAEA NRVVAQQNQE FQSPRTVDGT DTAQAVAGQG ATQAAAGDEL RLLVADESES
RSTEDGGSAG GDGDLPGGVD AGSAVAMEEL EAAKRENDEL NTRVQDLQDQ VETLQRLLEL
KNSQLADMQG MVSEEESPAP TDTGVTESDA DPATAPVEGD LGAGTGEEPV ADGQVDEAAD
GESADTAMAE EESAMAPDEA DIAGEEPFGG DVDAGAADEV VAEQPAVTEQ ESSSEPEPAA
VPQAQQPKPQ QPVTAPEKAF PGNVIDGILN NPMYQIALGG GLILLLLLLL LVARRNANRE
KEFYDQLNSD EGEGGDSFDL SLEDEGEAEA EAGDAIAEAE TYVAYGRHDQ AAQVLENAIS
REPSRTDLRL KLLSVYADNQ DRDAFEKQYR EVEALDDEAA IQEAESLRER LAEAEAMPSI
DDLESQLRSD SFGSQPEQEP ATEQASDDWD ISDELKADEF EATSGPADEN EFGELESDVS
KESDGRDDMI EYDLSGIGEE SESEDESATE TDYASLDLDS GLDEATGTSE SKEDDFSLDF
ESAFEDDALA GSDEPSLESD EAEPVEADLS GTGSDQEDDL ELGFDLDDDL ESTEEEPVKQ
EDTEVSDLDL ESDSLDESFL DELDAELDKV AGEDDEPSEL ELGESDLDDL ELDVSDEDLA
LMEEFSDNGE PAGPQEDEPS LEDELGLEDA LSESEADEPG VDQQNPEELA EQTEEVAEAE
PAPEELEDEV VPVASDSLDE GSTRSDSGLD IDESALDDED DFDFLAGTDE AATKLDLARA
YIEMGDSDGA RDILEEVALE GNEEQKAEAQ ELLKNLS
|
|---|
| |