| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_1027 |
|---|
| Symbol | rpsA |
|---|
| ID | 4656294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | + |
|---|
| Start bp | 1175299 |
|---|
| End bp | 1176990 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639810989 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_958306 |
|---|
| Protein GI | 120553955 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000294308 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA GCTTTGCGGA TCTTTTTGAA GAAAGTCTAA AAGAAATTGA CATGCAACCG
GGTTCCATCG TCCAGGGAAC CGTAGTTGAC GTCGACAACG ACTGGGTCAC CGTTAACGCC
GGACTGAAGT CCGAAGGCGT TATCCCCGCC TCCCAGTTCC TGAACGAAAA AGGCGAGTTG
GAAGTAGCTG TCGGCGATGT TGTCGATGTG GCTCTCGATG CAGTTGAAGA CGGTTTCGGT
GAAACCCGTC TGTCCCGTGA AAAGGCCAAG CGCGCTGAAG CGTGGAAGGT TCTCGAGAAG
TCCTTCGAAG CTGAAGAAGT GGTCAAGGGT ATTATCAATG GCAAGGTCAA AGGTGGTTTC
ACTGTTGATC TGGCCGGCAT CCGTGCCTTC CTGCCGGGTT CCCTGGTAGA CGTTCGTCCG
GTTCGCGACA CTGCGCACCT GGAGAACAAA GAGCTTGAAT TCAAGGTTAT CAAGCTGGAC
CAGAAGCGTA ACAACGTGGT TGTTTCCCGC CGCGCCGTTC TGGAAGCTGA AAACAGCGAG
CAGCGTGAAG CTCTGCTGGA AACCCTGACC GAAGGTCTGG AAATCAAGGG TATCGTCAAG
AACCTGACCG ACTACGGTGC ATTCGTAGAC CTGGGCGGTG TTGACGGCCT GCTGCACATC
ACTGATATGG CCTGGAAGCG CATCAAGCAT CCGAGCGAAA TCGTGAATGT GGGCGACGAA
ATCAATGTTA AAGTCCTGAA GTTTGACCGT GAGCGCAACC GTGTGTCTCT GGGTCTGAAG
CAGCTGGGCG AAGATCCCTG GGTCGACATC AAAGGTCGTT ACCCGGAAGG TTCCAAGGTT
ACTGCTCGCG TAACCAACCT GACCGACTAC GGCTGCTTTG CCGAGCTGGA AGAGGGTGTT
GAAGGTCTGG TCCACGTATC CGAAATGGAT TGGACCAACA AGAACATCCA TCCGTCCAAG
GTTGTTCAGG TAGGTGACGA AGTAGAAGTG ATGATCCTGG ATATCGACGA AGAGCGTCGT
CGTATCTCTC TGGGCATCAA GCAGTGCGTT GCCAACCCGT GGGAAGATTT CTCCAGCAAC
TTCAACAAGG GCGACCGTAT CTCCGGCAAG ATCAAGTCCA TCACGGACTT CGGTATCTTC
ATCGGCCTGG ACGGTGGCAT CGATGGTCTG GTTCACCTGT CTGACATCAG CTGGAACGAG
ACTGGCGAAG AAGCCGTTCG CGAATACAAG AAGGGCGACG AAGTTGAAAC CGTTATCCTG
TCTGTTGATC CAGAGCGTGA GCGCATCTCC CTGGGCATCA AACAGCTGGA AAGCGATCCG
TTTGCCGAGT TCGTTCAGCT GAACGACAAG GGCTCCATCG TTAAGGGCAC CGTATCTGCG
GTTGACGCCA AAGGCGCCAC CATTGCCCTG AACGAAGAAG TTGAAGCGGT ACTGAAAGCC
TCTGAAATCA GCCGTGACCG CGTAGAAGAC GCGCGTAACG TTCTGAAGGA AGGCGAAGAA
GTTGAAGCGA AGATCATCAG CATCGATCGC AAAAACCGCG TGATCAACCT GTCTGTCAAG
TCCAAAGACG TTGAGGACGA CAAGCAGGCC CTGGAAAACG TACGCAGTAA GGCTGCAGAA
TCCTCAGGTG CCACCACCAT TGGTGACCTG ATCAAGGAGC AGATGCAGCA ACAGAACGCT
AACAAGGACT AA
|
|---|
| Protein sequence | MSESFADLFE ESLKEIDMQP GSIVQGTVVD VDNDWVTVNA GLKSEGVIPA SQFLNEKGEL
EVAVGDVVDV ALDAVEDGFG ETRLSREKAK RAEAWKVLEK SFEAEEVVKG IINGKVKGGF
TVDLAGIRAF LPGSLVDVRP VRDTAHLENK ELEFKVIKLD QKRNNVVVSR RAVLEAENSE
QREALLETLT EGLEIKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRIKH PSEIVNVGDE
INVKVLKFDR ERNRVSLGLK QLGEDPWVDI KGRYPEGSKV TARVTNLTDY GCFAELEEGV
EGLVHVSEMD WTNKNIHPSK VVQVGDEVEV MILDIDEERR RISLGIKQCV ANPWEDFSSN
FNKGDRISGK IKSITDFGIF IGLDGGIDGL VHLSDISWNE TGEEAVREYK KGDEVETVIL
SVDPERERIS LGIKQLESDP FAEFVQLNDK GSIVKGTVSA VDAKGATIAL NEEVEAVLKA
SEISRDRVED ARNVLKEGEE VEAKIISIDR KNRVINLSVK SKDVEDDKQA LENVRSKAAE
SSGATTIGDL IKEQMQQQNA NKD
|
|---|
| |