Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mvan_5753 |
Symbol | |
ID | 4643710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Mycobacterium vanbaalenii PYR-1 |
Kingdom | Bacteria |
Replicon accession | NC_008726 |
Strand | - |
Start bp | 6142520 |
End bp | 6143392 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639809229 |
Product | rhomboid family protein |
Protein accession | YP_956524 |
Protein GI | 120406695 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0172846 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGTACC CCTACCCGCC GGGCGCCCCG TACCAGCAGG TCCCGACCTG CTTCCGGCAT CCCGACCGCC AGACCTACGT GCGCTGCACA CGCTGCAACC GGTTCATCTG CCCCGAGTGC ATGCACGATG CGGCGGTCGG GCATCAGTGC CCCGACTGCG TGGGCGAGGG CGCCCGCTCG GTACGTCCGG TCACCAACGC CGTCGGCGCC AGGCCGGCGA GGTCGACGAC TCCCGTGGTC ACCTATGCGC TGATCGGCCT CAACCTGCTG ATGTTCGCGC TCCAGATGGC GTCGCCCGAC CTGGACCGCG CCCTGGGACT GTGGCCGCCC GCCGCAGCCG ACGGCGAGCT GTACCGGCTG CTGACCTCGG CGTTCCTGCA CTTCAGCGTC ACCCACATCG CGTTCAACAT GCTGGCGCTG TACTTCGTGG GTGCGCCACT GGAGTTCGCG CTGGGCAGGC TGCGATTCGT CGCGCTCTAC CTGTTCAGCG CGCTCGGCGG CTCGGTGCTG GTGTATCTGC TGACGTTCAA CGCGCTCACC GCGGGTGCGT CGGGGGCGGT GTTCGGATTG TTCGGTGCGA CGTTCGTGGT GGGCAAGCGC CTCAACATGG ATGTTCGGTC CGTCGTGATG ATCATCGGGC TGAACCTGGC GTTCACGTTC CTGATTCCGC TGTTCACGTC GCAGAACATC AGCTGGCAGG GCCATATCGG CGGGCTGGTG ACCGGCGCGG TGGTGGCTGC GGCGTTCGTC TACGCGCCAC GGCAGCAGCG CAATCTCGTG CAGGCGGGCG CGGCCGTCGC GCTGCTGGTG CTGTTCGTGG CGCTGGTGGC ATGGCGCACC GTCGAGCTGC GGACGATGCT CGGGCTCGGC TAA
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Protein sequence | MTYPYPPGAP YQQVPTCFRH PDRQTYVRCT RCNRFICPEC MHDAAVGHQC PDCVGEGARS VRPVTNAVGA RPARSTTPVV TYALIGLNLL MFALQMASPD LDRALGLWPP AAADGELYRL LTSAFLHFSV THIAFNMLAL YFVGAPLEFA LGRLRFVALY LFSALGGSVL VYLLTFNALT AGASGAVFGL FGATFVVGKR LNMDVRSVVM IIGLNLAFTF LIPLFTSQNI SWQGHIGGLV TGAVVAAAFV YAPRQQRNLV QAGAAVALLV LFVALVAWRT VELRTMLGLG
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