Gene Mvan_5753 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMvan_5753 
Symbol 
ID4643710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium vanbaalenii PYR-1 
KingdomBacteria 
Replicon accessionNC_008726 
Strand
Start bp6142520 
End bp6143392 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content68% 
IMG OID639809229 
Productrhomboid family protein 
Protein accessionYP_956524 
Protein GI120406695 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0172846 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGTACC CCTACCCGCC GGGCGCCCCG TACCAGCAGG TCCCGACCTG CTTCCGGCAT 
CCCGACCGCC AGACCTACGT GCGCTGCACA CGCTGCAACC GGTTCATCTG CCCCGAGTGC
ATGCACGATG CGGCGGTCGG GCATCAGTGC CCCGACTGCG TGGGCGAGGG CGCCCGCTCG
GTACGTCCGG TCACCAACGC CGTCGGCGCC AGGCCGGCGA GGTCGACGAC TCCCGTGGTC
ACCTATGCGC TGATCGGCCT CAACCTGCTG ATGTTCGCGC TCCAGATGGC GTCGCCCGAC
CTGGACCGCG CCCTGGGACT GTGGCCGCCC GCCGCAGCCG ACGGCGAGCT GTACCGGCTG
CTGACCTCGG CGTTCCTGCA CTTCAGCGTC ACCCACATCG CGTTCAACAT GCTGGCGCTG
TACTTCGTGG GTGCGCCACT GGAGTTCGCG CTGGGCAGGC TGCGATTCGT CGCGCTCTAC
CTGTTCAGCG CGCTCGGCGG CTCGGTGCTG GTGTATCTGC TGACGTTCAA CGCGCTCACC
GCGGGTGCGT CGGGGGCGGT GTTCGGATTG TTCGGTGCGA CGTTCGTGGT GGGCAAGCGC
CTCAACATGG ATGTTCGGTC CGTCGTGATG ATCATCGGGC TGAACCTGGC GTTCACGTTC
CTGATTCCGC TGTTCACGTC GCAGAACATC AGCTGGCAGG GCCATATCGG CGGGCTGGTG
ACCGGCGCGG TGGTGGCTGC GGCGTTCGTC TACGCGCCAC GGCAGCAGCG CAATCTCGTG
CAGGCGGGCG CGGCCGTCGC GCTGCTGGTG CTGTTCGTGG CGCTGGTGGC ATGGCGCACC
GTCGAGCTGC GGACGATGCT CGGGCTCGGC TAA
 
Protein sequence
MTYPYPPGAP YQQVPTCFRH PDRQTYVRCT RCNRFICPEC MHDAAVGHQC PDCVGEGARS 
VRPVTNAVGA RPARSTTPVV TYALIGLNLL MFALQMASPD LDRALGLWPP AAADGELYRL
LTSAFLHFSV THIAFNMLAL YFVGAPLEFA LGRLRFVALY LFSALGGSVL VYLLTFNALT
AGASGAVFGL FGATFVVGKR LNMDVRSVVM IIGLNLAFTF LIPLFTSQNI SWQGHIGGLV
TGAVVAAAFV YAPRQQRNLV QAGAAVALLV LFVALVAWRT VELRTMLGLG