| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_5576 |
|---|
| Symbol | |
|---|
| ID | 4647145 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | + |
|---|
| Start bp | 5955824 |
|---|
| End bp | 5957335 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639809048 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_956347 |
|---|
| Protein GI | 120406518 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component
[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAGAA CCCTTCAGCT GACGCCTCCG GGTTGCTACG GTCCGGCGAT GCGCTATCCC
CGTACAGTCC TGCTTGCGGT GCTGGCCGCG ATCGCCGTGC TGCTGACGGC GTGCGGCTCG
TCCGGTTCAG GGAACCCGGT GGAGTCCAGC GGAGTGCTGC GCGTCGGCAC CGAAGGCGTG
TACGCCCCGT TCAGCTACCA CGACCCGGCC ACCGGTCAGC TCACCGGCTA CGACGTCGAC
GTCGCACGCG CCGTCGGCGA GAAACTGGGC GTCAACGTCG AATTCGTGGA GACGCCGTGG
GATTCGATCT TCGCCGCGCT GGAGGCCAAC CGGTTCGACG TCGTCGCCAA CCAGGTGACG
ATCACCCCGG AGCGGCAGCA GAAGTACGAC CTGTCCGAGC CGTACTCGAT CGGCGAGGGC
GTGATCGTCA CCCGCGCCGA CGACGACTCG ATCACCTCGC TGGCCGACCT GAGAGGCAAG
CGGGCCGCGC AGAGCACCAC CAGCAACTGG GCCGGCGTCG CGCGCGACGC CGGCGCGCAG
ATCGAATCGG TGGAAGGGCT CACCCAGGCG ATGGCCCTGC TCAGCCAGGG CCGGGTCGAC
GTGGTGGTCA ACGACAGCCT CTCCATCTAC GCCTACCTCG CCGAGACGAA CGACACCGCG
GTCAAGATCG CAGGCGCCAC AGGTGAAAAG AGCGAACAGG GCTTCGCCGC GCGCAAGAAC
AGCGGTCTGC TGCCGGACCT CAACACGGCG CTCGAGGAGC TGAAGGCCGA CGGCACACTG
GCCGAGATCT CGCAGAAATA CCTGAAGACC AACGCCTCCG GTGGTCAGGA CGCGCCGCAG
ACCCAGCCCC GGTCGGCGCT GCGACTCGTG CTCGACAACC TGTGGCCGCT GGCCAGAGCC
GCGCTGACGA TGACGATCCC GTTGACGATC ATCAGCTTCG TCATCGGTCT GGTGATCGCA
CTCGGGGTCG CGCTGGCCCG GCTGTCGTCC AACGTCGTGT TGACCAACCT CGCCCGCTTC
TACATCTCGG TGATCCGTGG TACGCCGCTG CTGGTGCAGC TGTTCATCGT GTTCTTCGCG
CTGCCCGAAT TCGGCGTCCG GATCGACCCG TTCCCGGCGG CGGTGATCGC GTTCAGCCTC
AACGTCGGCG GGTACGCGGC CGAGATCATC CGCTCGGCGA TCCAGAGCAT CCCGAAGGGG
CAGTGGGAAG CGGCCGAGAC GATCGGCCTG AACTATGCGG GCACCCTGCG GCGGATCATC
CTGCCGCAGG CCACCCGGGT CGCGGTGCCG CCGCTGTCGA ACACGCTGAT CTCGTTGGTC
AAAGACACTT CCCTCGCGTC GACGATCCTG GTGACCGAAC TGCTGCGTCA GGCACAGATC
ATCGCCGCCC CCACATTCGA GTTCTTCGCG CTCTACGGCA CCGCCGCCGT CTACTACTGG
GTGATCTGCC TGGTGCTGTC GTTCGGCCAG GCCCGGTTCG AACGCCGACT GGAAAGGTAC
GTGGCCAAAT GA
|
|---|
| Protein sequence | MSRTLQLTPP GCYGPAMRYP RTVLLAVLAA IAVLLTACGS SGSGNPVESS GVLRVGTEGV
YAPFSYHDPA TGQLTGYDVD VARAVGEKLG VNVEFVETPW DSIFAALEAN RFDVVANQVT
ITPERQQKYD LSEPYSIGEG VIVTRADDDS ITSLADLRGK RAAQSTTSNW AGVARDAGAQ
IESVEGLTQA MALLSQGRVD VVVNDSLSIY AYLAETNDTA VKIAGATGEK SEQGFAARKN
SGLLPDLNTA LEELKADGTL AEISQKYLKT NASGGQDAPQ TQPRSALRLV LDNLWPLARA
ALTMTIPLTI ISFVIGLVIA LGVALARLSS NVVLTNLARF YISVIRGTPL LVQLFIVFFA
LPEFGVRIDP FPAAVIAFSL NVGGYAAEII RSAIQSIPKG QWEAAETIGL NYAGTLRRII
LPQATRVAVP PLSNTLISLV KDTSLASTIL VTELLRQAQI IAAPTFEFFA LYGTAAVYYW
VICLVLSFGQ ARFERRLERY VAK
|
|---|
| |