| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mvan_5405 |
|---|
| Symbol | |
|---|
| ID | 4648085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium vanbaalenii PYR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008726 |
|---|
| Strand | - |
|---|
| Start bp | 5787041 |
|---|
| End bp | 5787616 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639808881 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_956182 |
|---|
| Protein GI | 120406353 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2064] Flp pilus assembly protein TadC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.901064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.137525 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTGGG CGGCGTTGTT TCTTGCCGCG GCGGCACTCG CGGTGCCGAA TGTGTCGGCA
ACCAGGATGC GGCGGCAGGA CCTGCAGTCG GTGCGCGATA CCCGCCGCCA TCCGGTGACC
GACGACATCC TCGCGGTGGC GGCCAGTCTC GACGTGCTCG CGGCGTGTCT GCGATCCGGC
ATGCCGGTGG CGTCCGCGGC GGCCGCGGTG GCGGAGTCGG CGCCGGCGGG GCTGGCGATG
CTGCTGCGGC GCGCCGCCGA CCTTGTCGCG CTCGGCGCCG ATCCCAACCG GGCGTGGGCG
AATCCCGATG GGGTGGCGGA TCGGTACGTG GACGCCTTCC TGCGGATGGC GCGCCGGTCC
GCCTCGTCGG GGACCGCGCT GGCCCAGGGC GTCGAGGATC TTGCGGTTCA GTTGCGCGGC
GAGGCGGTCG ACGCGGCGAG CGCCCGGGCG GAGCGCGCTT CGGTGCTGAT GGCCGCTCCG
CTGGGTGTGT GTTATCTCCC GGCGTTTCTG TGCGTGGGCA TCGTCCCGGT CGTCGCCGGA
CTGGCCGGCG AGGTTCTGCA GTCGGGATTG CTGTGA
|
|---|
| Protein sequence | MTWAALFLAA AALAVPNVSA TRMRRQDLQS VRDTRRHPVT DDILAVAASL DVLAACLRSG
MPVASAAAAV AESAPAGLAM LLRRAADLVA LGADPNRAWA NPDGVADRYV DAFLRMARRS
ASSGTALAQG VEDLAVQLRG EAVDAASARA ERASVLMAAP LGVCYLPAFL CVGIVPVVAG
LAGEVLQSGL L
|
|---|
| |